Query= MSMg01no475_c03.b1 MSMg01no475_c03.b1 CHROMAT_FILE:
MSMg01no475_c03.b1 PHD_FILE: MSMg01no475_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:48 2005
(417 letters)
>mm_chr8_45544146_45544963
Length = 818
Score = 700 bits (362), Expect = 0.0
Identities = 404/422 (95%), Gaps = 9/422 (2%)
Strand = Plus / Plus
Query: 1 tctttttgttgctgtttaataaatgtaattttgctactgttatgagtcacaatgtaaatt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttttgttgctgtttcataaatgtaattttgctactgttatgagtcacaatgtaaatt 260
Query: 61 tctgtgttttctagtggtcttgggcaactccactgaaagtgtctcttcctcagcctcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgttttctagtggtcttgggcaactccactgaaagtgtctcttcctcagcctcagc 320
Query: 121 ctaggtttctatattagatttgaaaaacttgatcagctatttgttcagtcaaacaatcga 180
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 321 ctaggtttctatattagatttggaaaacttgatcggctatttgttcagtcaaacaatcca 380
Query: 181 aaatgtacagaaacactgcagcggggtagctttatgtcccagataatgtcacctgaacta 240
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aaatgtacagaaacactgcagtggggtagctttatgtcccagataatgtcacttgaacta 440
Query: 241 gagatgaaatttttt----attcaaaa-tcacctcctgactcagcagaactgttaagtgg 295
||||||||| | | |||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gagatgaaact----gcagaatcaaaaatcacctcctgactcagcagaactgttaagtgg 496
Query: 296 gagttcaatgctataactgcctgaaagggcctcttaataactgatgtcctactgtggatt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gagttcaatgctataactgcctgaaagggcctcttaataactgatgtcctactgtggatt 556
Query: 356 ttattctcacattgctaattttctactttaaacattctaactcctgggacatttctcagt 415
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttattctcacattcctaattttctactttaaacattctaactcctgggacatttctcagt 616
Query: 416 gt 417
||
Sbjct: 617 gt 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space: 330072
Effective search space used: 330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_c03.g1 MSMg01no475_c03.g1 CHROMAT_FILE:
MSMg01no475_c03.g1 PHD_FILE: MSMg01no475_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:48 2005
(537 letters)
>mm_chr8_45752568_45753504
Length = 937
Score = 1033 bits (534), Expect = 0.0
Identities = 536/537 (99%)
Strand = Plus / Minus
Query: 1 tgtttctttaactgctaagtaatatcatacttaacttagaagaggttattttcctgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgtttctttaactgctaagtaatatcatacttaacttagaagaggttattttcctgaaac 678
Query: 61 tctagtcgcaggtaattcacaagatagggttcatcgtctcctgggagagtaataggcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctagtcgcaggtaattcacaagatagggttcatcgtctcctgggagagtaataggcttt 618
Query: 121 caggaaccatgggttgactttagttcggaagaatgctctagggagaattgtgatcaggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caggaaccatgggttgactttagttcggaagaatgctctagggagaattgtgatcaggtg 558
Query: 181 tctacaaatgtgagatcgccctactcaatcaatttcaatgtgagaatcttagagaatagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tctacaaatgtgagatcgccctactcaatcaatttcaatgtgagaatcttagagaatagt 498
Query: 241 tgacaaaatggtgttagaataaagatttgttccatagtgagaacaccaaaatccacaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgacaaaatggtgttagaataaagatttgttccatagtgagaacaccaaaatccacaata 438
Query: 301 ttaaaagatacaaattatagagtttaccctggagtttcatatcactgctttcaagcataa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttaaaagatacaaattatagagtttaccctggagtttcatatcactgctttcaagcataa 378
Query: 361 gtaaaatgtgaaacttcacataatggtaagtatgtgtgtttagaaaccagaatatatatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtaaaatgtgaaacttcacataatggtaagtatgtgtgtttagaaaccagaatatatatg 318
Query: 421 aaattctttaaatagtttcccttgtacacgatcttataaggaggaaaccaaatactagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaattctttaaatagtttcccttgtacacgatcttataaggaggaaaccaaatactagac 258
Query: 481 ttcattttcatttgcaaacagncatgaagaaacaagaaacatttctaatttccaaag 537
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 257 ttcattttcatttgcaaacagtcatgaagaaacaagaaacatttctaatttccaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
