Query= MSMg01no475_g14.b1 MSMg01no475_g14.b1 CHROMAT_FILE:
MSMg01no475_g14.b1 PHD_FILE: MSMg01no475_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:10 2005
(529 letters)
>mm_chr8_14036741_14037669
Length = 929
Score = 839 bits (434), Expect = 0.0
Identities = 498/532 (93%), Gaps = 26/532 (4%)
Strand = Plus / Plus
Query: 1 agatctgatatcaaaataaatataaataaataacacaagcaagcaagcaagcaaacagaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 209 agatctgatatcaaaataaatataaataaataacacaagcaagcaa--------acagca 260
Query: 61 aattaaagagaattagaaggaaagcgaatacaggataataagctgtaatacctctgctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaaagagaattagaaggaaagcgaatacaggataataagctgtaatacctctgctac 320
Query: 121 tgccatacaccatgctaacgtgttcaaaacctctttggcttagatggaaataatgaaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatacaccatgctaacgtgttcaaaacctctttggcttagatggaaataatgaaact 380
Query: 181 gtgccatttgctcgtgggttggttctatctcaggctccaggcagaaaaaagggcaaacag 240
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gtgccatttgctcgtgggttgg------------ctccaggcagaaaaaagggcaaacag 428
Query: 241 agattgggtgataatcacactgctgtgtataagggaatccaaagctgtgaagacaagctc 300
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 agattgtgtgagaatcacactgctgtgtataagggaatccaaagctgtgaagacaagctc 488
Query: 301 tttactaacaggtaagggtaaagatgaatgtgaagggtatagctcaccagtgagaaacag 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 tttactaacaggtaagggtaaagatgaatgtgaagggtgtagctcaccagtgagaaacag 548
Query: 361 tgagctaccgctacgtacctacaaggaccccaagtcaggacatgcatgcacgcggtagga 420
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 549 tgagctaccgctacgtacctacaaggaccccaagtcaggacatgcgtgcgcgcggtagga 608
Query: 421 gatcctagaccaattcccaacacg--aaaaacaacaacaac-aacaacaacaacaaacca 477
|||||||||||||||||||||||| ||||| || || ||| || |||||||||||||||
Sbjct: 609 gatcctagaccaattcccaacacggaaaaaataa-aa-aaccaa-aacaacaacaaacca 665
Query: 478 acccatgaccccatgcaaagttctaggatggggatcaagggactttcccagt 529
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 666 acccatgaccccatgcaaagttctaggatggggatcaaggggctttcccagt 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_g14.g1 MSMg01no475_g14.g1 CHROMAT_FILE:
MSMg01no475_g14.g1 PHD_FILE: MSMg01no475_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:10 2005
(443 letters)
>mm_chr8_14208262_14209103
Length = 842
Score = 764 bits (395), Expect = 0.0
Identities = 431/443 (97%), Gaps = 2/443 (0%)
Strand = Plus / Minus
Query: 1 ctgtcctgacttcctttggtgatgaacaacaatgtggaaacgtaatctaaataaatcctt 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 792 ctgtcctgacttcctttggtgatgaacaacaatgtggaaacgtaaactaaataaatcctt 733
Query: 61 tcctccacaacttgcttcttggtcataatatttgtgcagaaatagaaaccctggctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcctccacaacttgcttcttggtcataatatttgtgcagaaatagaaaccctggctgaga 673
Query: 121 caaaaatatttcaaaatattttttaattaaagaaatatggccagtaccagaaagaatatc 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caaaaatatttcaaaata-tttttaattaaagaaatatggccagtaccagaaagaatatc 614
Query: 181 aagaacaaggttgaggttgtacattccgataaatataaagaaaaaggtaaatgcacatgg 240
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 613 aagaacaaggttgaggttgtacattccgataaatataaaggaaaaggtaaatacacatgg 554
Query: 241 ttctaaactcccaagaactgtggaatatgttcaagatattaaattcaagaatctatggtg 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 -ccaaaactcccaagaactgtggaatatgttcaagatattaaattcaagaatctatggtg 495
Query: 301 gagaaaaaaatgctaacaaaaatataagttacagagaatccagtcaacaaaattacagca 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 494 gagaaaaaaatgctaacaaaaatataagttccagagaatccagtcaacaaaattacagca 435
Query: 361 taaaaaatccaaacagagagaaagcgccacaccaggtgaggggcattgagaaccgctctg 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaaaaatccaaacagagagaaagtgccacaccaggtgaggggcattgagaaccgctctg 375
Query: 421 ccatctgtatcagtcagagtgtc 443
| | |||||||||||||||||||
Sbjct: 374 caacctgtatcagtcagagtgtc 352
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
