BAC Information

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BAC

Clone NameMSMg01-475H13
Chromosome8 (Build37)
Map Location 75,589,813 - 75,723,009
singlet/doubletdoublet
Overlap geneLarge
Upstream geneOlfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H13.T7 (MSMg01no475_h13.b1)MSMg01-475H13.TJ (MSMg01no475_h13.g1)
ACCAG557290AG557291
length756745
length of high quality
(start - end)
569 (79 - 647)439 (80 - 518)
definitionCHROMAT_FILE: MSMg01no475_h13.b1 PHD_FILE: MSMg01no475_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005CHROMAT_FILE: MSMg01no475_h13.g1 PHD_FILE: MSMg01no475_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,589,813 - 75,590,379)(75,722,576 - 75,723,009)
sequence
NCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGATGTTAACTCAGTGAACCCAGAGAGCAAAAAGCAGATTA
TGCCTTTTGGTAAAACCAGTTATATGAAGCACATTGTTGCTTTCACTAGG
TACATATGTTATGTATCACATTGTGATTTCTATGCATGCTTCATAGCCCA
GCTGGCTGCCCCAAGACCAGATTTCCTTTGTTTTTTAATTGAAGTGTAGG
AAGTAATCCAGGCAAGCCCAAAGACAGTTTCGGATAGGAGACTCAGGAAA
CACTCCGGGATTTTCAGCTGTTTATTTCTTGTCACCAGCTCTATTCTGAA
GCCAAGGTAGTCAGCATTTTCCTAGACAATAGGGTCACCCCAATGTTTTA
AGATCCTTATGTGTGGGTGACATGAAACTATTTGACAAAGCTTAGAGATG
TTCTCAGTTGTCAAAATGTGTGTGTGTGTGTACATTACAAGGGGGTTATG
GGGCAAGACCAGGTCTGGGTTCTCAGTACCCTCAGAAAGAACATCTTTAA
CCATGAATAATTGCCAGACCCAAACTATCAATACTGAGATAAGGAACCTT
ATTCAAAGGGACTGTTGAAAACCTATATACACAGACACAGACACACACAT
ACACACAGACTCTGACTCAGACACAGACACACACACACACACACACACAC
ACACATATACACTCTAACACCCACACTGACACCCACTCTGACACTCTCAC
CTCGCC
CCCCCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTATCAGACACAATCACCGCAGCAAACTCATAAAC
ATGTACATACAGACACACAAGACACACACAGAATCACCAACTTTATCCAT
AAAACATCAAGCACCAAGTCTTTGGCTTGCCTCCACTTTATTTTTCACAG
TTGCCCTGTAAGGCCCAGACACATTCTTATTTAGCAACCAGAAATGGAAA
CAGTAACTGATTCATGTTTGAGAGCTAGAGAGTAGGGTGCTAATATTTAA
ACAGGGCTGTTGCATCTATCTTATTCTGTCTTGGGTTCTTTGACTTCCTA
AATGGGTTAGATTCTAAACCTCACCTCTCTTTGATGTAAGATCTCTCCCA
CTTGCTTTGTTATCCATAGAGGTTGGGACAATTAGCTATTTCCCTGTATG
TCACCTTGAATGGAAAATGTCCTTATCCAAAGTTCTTCAGGAGAGCTGTA
TTTTTTTTTTCAACTTGCAAGCTTTCAGACTTTACATTCTGGAACTCCAC
GGTATGCAACCTTCCCCAATCAATGACTACAGCCCACTCTTTGCAAACAG
ACCCCTATTTTGAACAATGCTGACCAACCCCCCCCTTCCCAATTTTATCT
ATGAGCCCACCCATTGAACTGCCTTCCCCCTCACTAACCTTACTCTCCAC
CTTTACTGCGTCGCCCTCCCCTCAACACCCCTGTCCTGTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h13.b1 MSMg01no475_h13.b1 CHROMAT_FILE:
MSMg01no475_h13.b1 PHD_FILE: MSMg01no475_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:15 2005
         (569 letters)



>mm_chr8_75589613_75590579
          Length = 967

 Score = 1065 bits (551), Expect = 0.0
 Identities = 564/569 (99%), Gaps = 2/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagagagcaaaaagcagattatgccttttggtaaaaccagttatatgaagcacattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagagagcaaaaagcagattatgccttttggtaaaaccagttatatgaagcacattgtt 260

                                                                       
Query: 61  gctttcactaggtacatatgttatgtatcacattgtgatttctatgcatgcttcatagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttcactaggtacatatgttatgtatcacattgtgatttctatgcatgcttcatagcc 320

                                                                       
Query: 121 cagctggctgccccaagaccagatttcctttgttttttaattgaagtgtaggaagtaatc 180
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 321 cagctggctgccccaagaccagatttcctttgttttctaattgaagtgtaggaagtaagc 380

                                                                       
Query: 181 caggcaagcccaaagacagtttcggataggagactcaggaaacactccgggattttcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcaagcccaaagacagtttcggataggagactcaggaaacactccgggattttcagc 440

                                                                       
Query: 241 tgtttatttcttgtcaccagctctattctgaagccaaggtagtcagcattttcctagaca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttatttcatgtcaccagctctattctgaagccaaggtagtcagcattttcctagaca 500

                                                                       
Query: 301 atagggtcaccccaatgttttaagatccttatgtgtgggtgacatgaaactatttgacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagggtcaccccaatgttttaagatccttatgtgtgggtgacatgaaactatttgacaa 560

                                                                       
Query: 361 agcttagagatgttctcagttgtcaaaatgtgtgtgtgtgtgtacattacaagggggtta 420
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 561 agcttagagatgttctcagttgtcaaaatgtgtgtgtgtgt--acattacaagggggtta 618

                                                                       
Query: 421 tggggcaagaccaggtctgggttctcagtaccctcagaaagaacatctttaaccatgaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tggggcaagaccaggtctgggttctcagtaccctcagaaagaacatctttaaccatgaat 678

                                                                       
Query: 481 aattgccagacccaaactatcaatactgagataaggaaccttattcaaagggactgttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aattgccagacccaaactatcaatactgagataaggaaccttattcaaagggactgttga 738

                                        
Query: 541 aaacctatatacacagacacagacacaca 569
           |||||||||||||||||||||||||||||
Sbjct: 739 aaacctatatacacagacacagacacaca 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 967
Length adjustment: 10
Effective length of query: 559
Effective length of database: 957
Effective search space:   534963
Effective search space used:   534963
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no475_h13.g1 MSMg01no475_h13.g1 CHROMAT_FILE:
MSMg01no475_h13.g1 PHD_FILE: MSMg01no475_h13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:15 2005
         (439 letters)



>mm_chr8_75722372_75723209
          Length = 838

 Score =  799 bits (413), Expect = 0.0
 Identities = 430/437 (98%), Gaps = 5/437 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gcagcaaactcataaacatgtacatacagacacacaagacacacacagaatcaccaactt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcagcaaactcataaacatgtacatacagacacacaagacacacacagaatcaccaactt 579

                                                                       
Query: 65  tatccataaaacatcaagcaccaagtctttggcttgcctccactttatttttcacagttg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tatccatagaacatcaagcaccaagtctttggcttgcctccactttatttttcacagttg 519

                                                                       
Query: 125 ccctgtaaggcccagacacattcttatttagcaaccagaaatggaaacagtaactgattc 184
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 518 ccctgtaaggcccagacacattcttatttagcaaccagaaatggaagcagtaactgattc 459

                                                                       
Query: 185 atgtttgagagctagagagtagggtgctaatatttaaacagggctgttgcatctatctta 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 458 atgtttgagagctagagagtagggtgctaatatttaaacagggctgttgcatcta--tta 401

                                                                       
Query: 245 t--tctgtcttgggttctttgacttcctaaatgggttagattctaaacctcacctctctt 302
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagtctgtcttgggttctttgacttcctaaatgggttagattctaaacctcacctctctt 341

                                                                       
Query: 303 tgatgtaagatctctcccacttgctttgttatccatagaggttgggacaattagctattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgatgtaagatctctcccacttgctttgttatccatagaggttgggacaattagctattt 281

                                                                       
Query: 363 ccctgtatgtcaccttgaatggaaaatgtccttatccaaagttcttcaggagagctgtat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 280 ccctgtatgtcaccttgaatggaaaatgtccttatccaaagttcttcaggagagctgta- 222

                            
Query: 423 tttttttttcaacttgc 439
           |||||||||||||||||
Sbjct: 221 tttttttttcaacttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 838
Length adjustment: 9
Effective length of query: 430
Effective length of database: 829
Effective search space:   356470
Effective search space used:   356470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)