Query= MSMg01no476_e05.b1 MSMg01no476_e05.b1 CHROMAT_FILE:
MSMg01no476_e05.b1 PHD_FILE: MSMg01no476_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:19 2005
(164 letters)
>mm_chr8_111995672_111996235
Length = 564
Score = 282 bits (146), Expect = 6e-81
Identities = 155/158 (98%), Gaps = 2/158 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttccagta-tctgcgtctgttggacatcgtagcttatgtctctcctttcatga 62
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ggaattcttccagaagt-tgcgtctgttggacatcgtagcttatgtctctcctttcatga 259
Query: 63 ttctccagaggagaggagctctttacttgcaggtttaaggcatggccacttttcttgtgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttctccagaggagaggagctctttacttgcaggtttaaggcatggccacttttcttgtgt 199
Query: 123 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 160
||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space: 86736
Effective search space used: 86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_e05.g1 MSMg01no476_e05.g1 CHROMAT_FILE:
MSMg01no476_e05.g1 PHD_FILE: MSMg01no476_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:19 2005
(526 letters)
>mm_chr8_111944801_111945726
Length = 926
Score = 940 bits (486), Expect = 0.0
Identities = 516/526 (98%)
Strand = Plus / Plus
Query: 1 ttcagatatagccaaggaggataatgagggaagagaacctttcagagccacaaggagcaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagatatagccagggaggataatgagggaagagaacctttcagagccacaaggagcaa 260
Query: 61 ccagtgaggaagcttaaccagagtgagcatggatccagtcagaaaatagcctctagccct 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggtgaggaagcttaaccagagtgagcatggatccagtcagaaaatagcctctagccct 320
Query: 121 gaggcccagttctatttccttccacagagatttcagaattgctgtgacccaggaacaggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gaggcccagttctatttccttccacagagatttcagaattgctgtgacccagtaacaggc 380
Query: 181 taggatttctattcttttgagttgtaaatgaaaatgcctgctgtggtcactctagagcat 240
||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 taggatttctattctttcgccttgtaaatgaaaatgcctactgtggtcactctagagcat 440
Query: 241 cttctgtcttattttgaatatgtgggcacaagtaaataagctggacttcttagccctatg 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctgccttattttgaatatgtgggcacaagtaaataagctggacttcttagccctatg 500
Query: 301 cccctaggtcagaagaaaccacccaagacccaggcttgagtctgtggagagattacatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccctaggtcagaagaaaccacccaagacccaggcttgagtctgtggagagattacatga 560
Query: 361 gactttagggtcttttccagagcaaagtgaaaatactttacccataaaagaagaaagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gactttagggtcttttccagagcaaagtgaaaatactttacccataaaagaagaaagcac 620
Query: 421 atgctgccatgaaagccggtggtggtgggttttatgctgttctcagttgtttgctgggtc 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 atgctgccatgaaagccggtggtggtgggtttcatgctgttctcagttgtttgctgggtc 680
Query: 481 ctggggaagttgataggttttagacattctcacttgattccctgcc 526
|||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 ctggggaagttgataggtgttagacattctcacttgattccctgcc 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
