BAC Information

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BAC

Clone NameMSMg01-476G17
Chromosome8 (Build37)
Map Location 35,974,408 - 35,974,511
singlet/doubletsinglet
Overlap geneTnks
Upstream geneRbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578
Downstream geneLOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476G17.T7 (MSMg01no476_g17.b1)MSMg01-476G17.TJ (MSMg01no476_g17.g1)
ACCAG558016AG558017
length795832
length of high quality
(start - end)
108 (69 - 176)134 (68 - 201)
definitionCHROMAT_FILE: MSMg01no476_g17.b1 PHD_FILE: MSMg01no476_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:31 2005CHROMAT_FILE: MSMg01no476_g17.g1 PHD_FILE: MSMg01no476_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCANACCGCGCCGCGGAATTC
TACAGACTTCTAACACTTACTTTTGAATCACCTTTGACATAGTTCATATA
TTTGCATCATTTTGAATCTCAACATGTGTTTTTTGAGAGTTGAGGGTTTT
TTTGTTTTTTTTTATTTTTTGCTCTGTGTTTTTGCCTTCCCCAAGGCACG
TCCTGCCCGTGCAACCGCCCCGTCTGTCCCGTCCCAGACCTCATTTTTTA
TACCTCCCTTGCCTTGATCTCCCCTACACCTGCCTGCCTCTACCTCCTGA
GCGCTGCCCTTTTTTTTTTTTCCCCCTTTTTCACCCCCTACCGCATTCAT
ATTCTTTCTCATTCCCCCCCTCCCCCTCCCCTTTTCCCCCCTTCCCTTAC
CCTCCCCCTCTACCCCGTCTTTTCCCCTCCCTCGCCCCCTCCTTTCCCTC
CTCTACTCTCCTTCCCCTCCTGCTTCCCCTTTCCCCCCTCTTTCCCCTTC
TCCCACCCCCCCCTACTCCCTTTCTCTCTCCCCCCTTCCCCTCTTTTTTT
CACCCCTCCTCCCCCTTTCTTCCTCCCCTTCCTCCCTTTCCCCCCTCCTC
CCCTTCTCTCATTTCCCCTCCCCCCTCCCTATCCTTCTTCCTTTCCTCGC
TTTCCTTCCCTCCCTCCCCCTTCCTCCTCCTTCCCCCCCCCCCTCTCCCC
CTCCTCTTTTTCCCCTCTCCCCTTTCCTTTCTCCTTTTATCTCCCCCCCC
CCCCTCTTCTTCTCCTCCCCCCTCCCCTTCTCCCCCCCCCTCCCN
TGCTGTGGTAGCCTGGGGGCGCCTGGTGCAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCATCCTAAAATGTGATTGGCAAGTTGAAAGTTT
TAGTAGTAGCTGAATTCACTGTTCATGTTTAAAATAGTGGCAAGAAGAAG
AGGAGGAAGAGGAGGAGGAGACAGAGAGACAGATGAGGGGGGAGAAGGGA
GGAGTTTTTTTTTCCTTTTCCTCTCGCCCCGCGCGCCTTTTTTTTTTTTG
NNNCCNCCCGCTCTTTTTTTTTTTTCTTCCTCCCTTTTTCTCCTTGTCCC
GCGGGCCCCTTGGCCTCCCTTTTGCGCCGCCCCCCCCCCCCTCCCCCTCC
CCCCTTTTTTTTTCCCCCCCCCCCCGTCTGGGGTCTTCCCTTTTTCTTTT
TTATTTTCCCCTCCTTCCCTTCTTCTTTTTTTTTTTCTCTCTTCTCCTCT
TCTCCATTTTTCCCTCCTTCTTTCTCCCCTTTTCCCTCCCCCTTCTCCCT
CTCTTTCTAGCCCGTTTGTCCCCCTTCTTCTCTTGTTTTTTTCTTTTCCC
TCTCGTCTTCTCTCTTTGCGCGCTGTCCCTCTTCTCTTTTTCTCCCCCCC
CTTTTCCATTTTCCTTTACGCCCCCTGTTTTCTCTCTTTTCTTTTTGTCC
TCCCCTCTTTCCCTTCTCCCCCTCTTCCCTTTTTTTCCCTCCTCCTACCC
CTTTTTCTTTTTTTTTCCCTCCCTTTCTTTCCCCCGTCAACCCCTCTCCC
CACTTTTCCCTCCCTCCCCCCCTTTTCTTATTTTATTTTCCTCCCCTCCT
TTTTCTCCCTCCTTTCGTCCTTATTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_g17.b1 MSMg01no476_g17.b1 CHROMAT_FILE:
MSMg01no476_g17.b1 PHD_FILE: MSMg01no476_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:31 2005
         (108 letters)



>mm_chr8_35974208_35974714
          Length = 507

 Score =  195 bits (101), Expect = 5e-55
 Identities = 104/105 (99%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttttgaatcacctttgacatagttcatatatttgcatcattttgaatctcaacatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acttttgaatcacctttgacatagttcatatatttgcatcattttgaatctcaacatgtg 245

                                                        
Query: 61  ttttttgagagttgagggtttttttgtttttttttattttttgct 105
           |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 244 ttttttgagagttgagggtttttttgtttttttt-attttttgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 507
Length adjustment: 8
Effective length of query: 100
Effective length of database: 499
Effective search space:    49900
Effective search space used:    49900
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)