GGGGTTATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCGAGAGGATCCG
CGGAATTCCCACCTTTTACCATTAACTGGCTTCAGAACAGTGGTGTCTTC
CTTGTGTCCTACTTAGGGTTCCCTTTGTCCTCCAGTTCCCGCCAGTAATT
TTTGAGCTGTCTCAGTAGCAACCACTTGAAGTTACATTTAGTTTTTGTTT
TAAATCTCATTACTTTTCATTGTTTAGCACCTAAATGACTTTGCTGACAT
TACTCAAAATTGAAAATGCTTGTTCCTTAATTCTAATTTAAATTCAACAA
GCCAAATTATTCTATACATTAGCAGTGGTTACTTGAAATTTTATGTTTAC
AGCTAGTAGTAAATCAATTCTTGATAAGTAAAAAAAAAAACCCCGACCAT
AATAGTAACACTTAATCTCCCCATTAGCTTGACTGTTTTGTAAATAAAGC
ATATTTTGAATGAAAAAACTAAAACACTTTTACGTTTTTGTACAGTTTTT
AATGATATAACTTACACCATTATATATTACGCTACTATATATATACACAT
ATATATGTATTTATGTTGAAGAAACTATCACTGTACAATCAAGGGTGTCA
TGCTGCATATCTCTGTCTAAGACAAACAAACCCGTTTCCTGTTTCTCCAC
CCTTTCCCCCGTTTTTGTTACCGCCCTTATTTTATTCCACCCTGTTTTCT
AATTTTAATTTTTCCCACCATTTGTCCCTTATCCTTTTGAACTCCCTG

NTTTCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCCTGTTNCTGTTTAAAATAGTGGC
AAGAAGAAGAGGAGGATTATTAGCAGGAGACAGAGAGACTGATGAGGGGG
GAGAAGGGAGGAGTTTTCTTTTTCTGTCTTTCCCTTTTTTCCTTTTTCTT
TTTTTTTTTCTTTTTTTTTCTTTTCCCTTTTCCTTTTTTCCTTCTCTCTC
TCCTTTTTTTTTTTTTTCTTTTTTTTTCTCTCTTTCTCTTCCCTTTCCTT
CTTTCTTTTCTCCCTCCCCCCCCCCCTTTTCCGTGNCTTTTCCCCGCCGG
CCCCCNCCCCCCTTTGCCCCCTTTTTTTTTTCCNCCCTCTTCTCTTCTTT
CTTTTTTTTTTCCTCCTCCTCCTTTCTTTTTCCCTTCTTTCTTTTTTTTC
CTTTTCTTCTCTCCCTTCTTCCCTTTTCTTTTTTTTTTTCTTTTTTCCCC
CTTTCTTTTTCCCCCCTTTCCTTTTCCCTTTTTTTTTTCTTTTTTTTTCC
CTTTTTTCTCTTCTTCCCTTTCCTTTTTTTTTTCTCCCTTTTTTTCTCCT
TTTTTTCCCTCTTTTTTTTTCTCCCCCTTTTTTTTCTTTTCCTTCTTCTC
TTTCCTTTTTTTCCCTTTTCTTCCCCCCCTCTCCTTTTTTTTTTTCCTCT
TTTTCTCCCCTTCCTTTCCTCTTTCTTTTTTTTTCNTGGTCTCTCTCTTT
CCTTTTTTTCCCTCCCTTTTTTTTTTTTTTCCTCTTCCCCTTTTTTTTCC
CTTTTCCCCCG

Query= MSMg01no476_i04.b1 MSMg01no476_i04.b1 CHROMAT_FILE:
MSMg01no476_i04.b1 PHD_FILE: MSMg01no476_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:38 2005
         (535 letters)



>mm_chr8_35988069_35989003
          Length = 935

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcccaccttttaccattaactggcttcagaacagtggtgtcttccttgtgtcctac 67
           |||||||||||   || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaattcccaccccatatcattaactggcttcagaacagtggtgtcttccttgtgtcctac 676

                                                                       
Query: 68  ttagggttccctttgtcctccagttcccgccagtaatttttgagctgtctcagtagcaac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttagggttccctttgtcctccagttcccgccagtaatttttgagctgtctcagtagcaac 616

                                                                       
Query: 128 cacttgaagttacatttagtttttgttttaaatctcattacttttcattgtttagcacct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cacttgaagttacatttagtttttgttttaaatctcattacttttcattgtttagcacct 556

                                                                       
Query: 188 aaatgactttgctgacattactcaaaattgaaaatgcttgttccttaattctaatttaaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatgactttgctgacattactcaaaattgaaaatgcttgttccttaattctaatttaaa 496

                                                                       
Query: 248 ttcaacaagccaaattattctatacattagcagtggttacttgaaattttatgtttacag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcaacaagccaaattattctatacattagcagtggttacttgaaattttatgtttacag 436

                                                                       
Query: 308 ctagtagtaaatcaattcttgataagtaaaaaaaaaaaccccgaccataatagtaacact 367
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 435 ctagtagtaaatcaattcttgataagtaaaaaaaaaacccccgaccataatagtaacact 376

                                                                       
Query: 368 taatctccccattagcttgactgttttgtaaataaagcatattttgaatgaaaaaactaa 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taatctccccattagcttgactgttttgtaaataaagcatattttgaatgaaaaaactaa 316

                                                                       
Query: 428 aacacttttacgtttttgtacagtttttaatgatataacttacaccattatatattacgc 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aacacttttacgtttttgtacagtttttaatgatataacttacaccattatatattacgc 256

                                                           
Query: 488 tactatatatatacacatatatatgtatttatgttgaagaaactatca 535
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tactatatatatacacatatatatgtatttatgttgaagaaactatca 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)