BAC Information

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BAC

Clone NameMSMg01-476I14
Chromosome8 (Build37)
Map Location 82,983,274 - 83,135,400
singlet/doubletdoublet
Overlap geneGypa, Frem3
Upstream geneLOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneSmarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476I14.T7 (MSMg01no476_i14.b1)MSMg01-476I14.TJ (MSMg01no476_i14.g1)
ACCAG558104AG558105
length731733
length of high quality
(start - end)
240 (72 - 311)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no476_i14.b1 PHD_FILE: MSMg01no476_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:40 2005CHROMAT_FILE: MSMg01no476_i14.g1 PHD_FILE: MSMg01no476_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,135,161 - 83,135,400)(82,983,274 - 82,983,513)
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGCAGGACCGC
GGAATTCCCTGTGACTAACACACCTGCAGCTGTATCCGGGTTCTTGTGGA
GCTGGGCGAGCCGAAGTGAGCGTACTTAACCTGTTGGGCCCCGAAATCAC
AGGGAAATTGGTGCGGGGAGAGCGCGCCTTGGAGCCGCGGGAAGTCCAGC
ACTGTCACCTTGCACTGATCCCCGCGCTGCACTCGAATCACTAGATCCCG
TTGTGGGTTAAGCCAAACCGAGCGGCCCTGTGGCACTTGGAACCCGGAGT
TGGCGATCAGAATTTCATGTTTCTGGTGACTACCACCATTAAGCGCTCCC
CAGGGATGTAGGTAAAGCTCACAGTGGGACACGTTTTCACTCAAGGGTAC
CCTTTCCCTCAGTGCACAAGTCAGAAGCAGGCAGATGAGAGTCACTAGCA
GCTGCACGGACATCCCAGGAACGCTCAGAGAATCTCCAGTCATAGCCTGA
TGGTACTCTGGAGTTGATATCCCCCCGAGGACGCCCTCTACTGTGTATAC
AGAGAGACTCTGCTGCAGGGCGGGAATACTTGGATTCCGTTCGATCTACG
ATCCGTCTCAACTACCAGCTAGGCATTATTTTTCTCCCGCTTTTTGCCCC
TTTTGTCTTCCCCCTGTTTTGGTGCCCCCCCCCCTCCCCATCCTTTCTTC
TTCCTTTCGCCCTTTGCCTTCTTTCCCTCCC
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGGCGTGTATATCTGCATA
ACTAAGTTCGCCTTTGGTAAGATGGTACTTTTTTCTTCCGTAGTGCTGAG
GAGGAAACTTTGAACTAGTTGCTGAGCCTGAGAGAGCATGGGAAGCTGAA
CTGTACTTTCAAATGGGATCTTGTAGAGTCGCTGCTCTACTTCCAGGTCT
CTACGCGTAGAAATCTTCTAAGGCTTCAACTGAGAAAAAAATAGTAAGAG
GAAAGAAGGAAACTCGTTTTTTTTAGTGGGGGTGGTGAAGACAGAGGGTA
CCATTACAAACTGTCGATGTTGGAATTATCAAAACAAAACAATGGCTTTT
ATCTTTTGGTTTGCTGCATCTTTGATGGAATAGTGTCTGAATGCTACATA
TTATACAAAACATATTCAAAGCTTCTTTTACTAACATGAACTGTACCCCC
ACTACCAAAAGTATTTCCTTTACCCACTGGCCCCCACCTCACCCTCAGGT
AGGGATGCATTATGCACTGCTTTTGACCCCGTTATACAGTTTGACTCACT
CCCAGGTGTCGCGTTTTGCCCCCGCCTGTCTTCTTACTTGTTTCATACTT
TTTTTTTTTCCGAATGTTCATCCTTATTATCTTTTATACCATCCTTTGTC
TTTTATCGCCCCGCCCTTTATCACATCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_i14.b1 MSMg01no476_i14.b1 CHROMAT_FILE:
MSMg01no476_i14.b1 PHD_FILE: MSMg01no476_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:40 2005
         (240 letters)



>mm_chr8_83134961_83135600
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgcagctgtatccgggttcttgtggagctgggcgagccgaagtgagcgtacttaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 440 acctgcagctgtatccgggttcttgtggagctgggcgagccgaagtgagtgtacttaacc 381

                                                                       
Query: 61  tgttgggccccgaaatcacagggaaattggtgcggggagagcgcgccttggagccgcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttgggccccgaaatcacagggaaattggtgcggggagagcgcgccttggagccgcggg 321

                                                                       
Query: 121 aagtccagcactgtcaccttgcactgatccccgcgctgcactcgaatcactagatcccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 aagtccagcactgtcaccttgcactgatccccgcgctgcactcgaatcactagatcccgc 261

                                                                       
Query: 181 tgtgggttaagccaaaccgagcggccctgtggcacttggaacccggagttggcgatcaga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtgggttaagccaaaccgagcggccctgtggcacttggaacccggagttggcgatcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no476_i14.g1 MSMg01no476_i14.g1 CHROMAT_FILE:
MSMg01no476_i14.g1 PHD_FILE: MSMg01no476_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:40 2005
         (240 letters)



>mm_chr8_82983074_82983713
          Length = 640

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggcgtgtatatctgcataactaagttcgcctttggtaagatggtacttttttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggcgtgtatatctgcataactaagttcgcctttggtaagatggtacttttttcttc 260

                                                                       
Query: 61  cgtagtgctgaggaggaaactttgaactagttgctgagcctgagagagcatgggaagctg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tgtagtgctgaggaggaaactttgaactagttgctgagcctgagagagcatgggatgctg 320

                                                                       
Query: 121 aactgtactttcaaatgggatcttgtagagtcgctgctctacttccaggtctctacgcgt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 321 aactgtactttcaaatgggatcttgtagagttgctgctctacttccaggtctctatgtgt 380

                                                                       
Query: 181 agaaatcttctaaggcttcaactgagaaaaaaatagtaagaggaaagaaggaaactcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatcttctaaggcttcaactgagaaaaaaatagtaagaggaaagaaggaaactcgtt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)