BAC Information

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BAC

Clone NameMSMg01-476O06
Chromosome8 (Build37)
Map Location 59,126,890 - 59,127,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
Downstream geneEG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476O06.T7 (MSMg01no476_o06.b1)MSMg01-476O06.TJ (MSMg01no476_o06.g1)
ACCAG558373AG558374
length750776
length of high quality
(start - end)
240 (81 - 320)179 (70 - 248)
definitionCHROMAT_FILE: MSMg01no476_o06.b1 PHD_FILE: MSMg01no476_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:09 2005CHROMAT_FILE: MSMg01no476_o06.g1 PHD_FILE: MSMg01no476_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCTCCTTCTTTCTATTACACAAGCTTCAATCAATAGTATATAAATGG
TTATTTCCATAAAGGAAATTTGATCGTAAAATGGACAAATATAATATCAA
CTTTAGGAATGAGAGATCTGGAGGGAGTTGGGGAAGCCAGATATTTTGGA
GCAATTCTCTGTACTAGGGAAACTAGGCAAAGACTAAAACATACCTGCTT
TAAGGTTAAGAGAAGCTAAAACCATAATGGAAAGATCGTGGTTCAGGATC
TTGGATTGTGAAAGAGCCATTTTTTTGTTTCCATCTCTTTGACCACTTTC
TAAGTGTGGATGCAGAGGAAGTGAGAGGGTCTTTAACTCTGGAGAACGGT
GAGAGCGAGCAGCGCTTCTGACTGAGAACAGGAATCCGCCTCAGCGGCTC
TCAGTTGAGACCCCGCCCCCCTAGGTCGGTTTGACAATCGATTATATAAA
TTTTGACACCGTTTGTTCAACGTGTTATTCTATCCCGACCCGGAGGATAG
TATTTGTAGGGTCTGACGACCATTTCATTACTTTGCTACTATCCCCTGTT
GGATTTCGTTCTTCCTCTCCTTGTCTTTCACTCCCTGCACAGTTTCTCTG
TCCCCTGATTCCCCCCTTTTATTTTTCCCCCTTTTTGTTATCCCGCACCT
TTTCGCGTCTAGTGTTTCCCTACTATATCCCTTTTCGCTTAGCCTCTTCT

NCATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCGCGCAATTCCTGATCTTTCCAAACTTTTATCATGAAT
GGGTGTTGAATCTTTTCTAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCATATATTAAACCATCCCTGCATTCCTGGAATAAAACCTAATTGGTCA
TTATGGATGATTGCTTTAATGTGCTCTTGGATTCGGTTAGCAAGAATTTT
ATTGATGATTTTTGTTTCTATTTTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGCTCCTTCTGTGGTTTAGGTATCACAGTAATAGTGGCT
TCATAAAACGATTTGCCTACAGTACCTTCTACTTCTATTTTGCGAATTAT
TTCTGTGCACAATTGTAATTATATCTCCTTTGATTGCCCGATATAACTCT
CGCCTATTCCCCTTTGGTCTTGCCCTTTTCTTGCCTGTTTCACTATTATT
AACCGCTTTTTATCTCTTTATCCGCTTTTTGTCCTGCCCATTTTTTTCTT
TTCGTTTCTTCCGATCCTTCTTTTGCCCTTTGCCCACCCGCCCCATATTC
TTTTTCCCTTTTTTTCTCCTTTTTTTCCCTTATCCCTCCATTTTCTTTCC
CTCTCTATTCTCTTTCCCCTCTCGCCCTCTTTCTTTATTTTCCTCCCCCC
CCTCTTTATTTCTCCCTTCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_o06.b1 MSMg01no476_o06.b1 CHROMAT_FILE:
MSMg01no476_o06.b1 PHD_FILE: MSMg01no476_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:09 2005
         (240 letters)



>mm_chr8_59126690_59127329
          Length = 640

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcaatagtatataaatggttatttccataaaggaaatttgatcgtaaaatggacaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcaatagtatataaatggttatttccataaaggaaatttgatcgtaaaatggacaaat 260

                                                                       
Query: 61  ataatatcaactttaggaatgagagatctggagggagttggggaagccagatattttgga 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ataatatcaactttaggaatgagagatctagagggagttggggaagccagatattttgga 320

                                                                       
Query: 121 gcaattctctgtactagggaaactaggcaaagactaaaacatacctgctttaaggttaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 321 gcaattctctgtactagggaaactaggcaaagactaaaacatacctgctttaaggcaaag 380

                                                                      
Query: 181 agaagctaaaaccataatggaaagatcgtggttcaggatcttggattgtgaaagagcca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagctaaaaccataatggaaagatcgtggttcaggatcttggattgtgaaagagcca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)