BAC Information

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BAC

Clone NameMSMg01-477A23
Chromosome8 (Build37)
Map Location 13,971,151 - 13,971,846
singlet/doubletsinglet
Overlap gene2610019F03Rik
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103
Downstream geneEG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A23.T7 (MSMg01no477_a23.b1)MSMg01-477A23.TJ (MSMg01no477_a23.g1)
ACCAG558502AG558503
length758869
length of high quality
(start - end)		704 (48 - 751)---
definitionCHROMAT_FILE: MSMg01no477_a23.b1 PHD_FILE: MSMg01no477_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:23 2005CHROMAT_FILE: MSMg01no477_a23.g1 PHD_FILE: MSMg01no477_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGAGCAGGCTTTCCAATCCAGCCTGATTACATATGGTTTTAGG
CTAGTCTGGCCACCTCTACATTTCCCTGTCTTTATTGTCACAAAACTGTA
GAGAAAAAAAAAAAAGAAGAAAGAAAAAAGAGAAGAGAAAAGAAAGCTAT
TTCATAAACCAACTCAGTGAGCATAAACACTGAGACCTAATTGAATGGAT
GCTGGCACATTTACTTGACAACATTAAGTTCAGTGAGAAGAGAAAGGCAA
AGAAAGGCAGGTTGCAGGAGAACAAGGATAACCATGGCTTGTTAGCTTTC
TACATGAAGGGTCATATGACACAAACAGAAAGAATCTAAGGCACTTTAAT
CTTGGACTTGGAGCCTCTAGAACCCTAGGAGTCTAGAACCCCAGGAGATA
AATGTTTGCTGTGTGAGGCATTGGCTTATCTTCTTATTGAGGCCACCCAG
ACAGGCCAAGACAGTCTTACGACATAAAACCAGAGACTCGCAGGGAATAA
AGCGCTTAGTACAGATAGAAATCTGCAGTTAACACGCACAGGCCCACTTT
ACTCCCTCAAAAAGGACACCGCGGTTCCCTTAGTAGACTTAGAAGCCGAG
CATGGACGACGCTGCACTTTACAACCCCCCATCCATCCCAGATCCACACC
AATGAGCGTTCATCAAGGAGCAGAGCCCCTGGAGTACCCACAAAGGGTGG
TCTGAACA

AAGCGAAGAGAACAAGAAATAAAGAGACAGAATCTTTTTTATTGCGTCAG
CTAGGGATGAGAGAGGAAAAGGAGGAGGAATATACAAGGGAGGGGGGGGG
GGGCGGGAGGAGGAGGGTCCGGCTGGCGGAGAGGGTGGGGGGGAGGGGAG
TGGGCGGGGCCGCGGTGCTCCGGGTTCCCGGGGTTAGGGTTTTCGCGAAG
ATGACTNCTAGGCGTGATCAGCGTTTTTTATGGTATCCCCCCCGCCGAAT
TGTTTGGTGTTATTAGTGTCTTTGCGGTCGGATCCTAACCTATTGTACCT
TATTTCTGCGAGGTGGAGGGGTGTGGTTGGAAGGAATCTCAACTATTAAT
ATACCTTTCTTTTTGGGTTGGAAGTGTGGGTTTATAAGCAAAAGGGTGGT
GTCCATGCAAAAATGTGTCCCTGTGTGTTTTTTTTGTTAACACGCATTTT
TTTTCCAGAGGTTTAGCGGCCGCGTTTAATGATTTTAACCTTACTTGTAC
CTCCTTCCTTTATAAGGAAAGGTATTGGTTGAGTGTATGCTGTCCCTCGC
CCTTTGTGGGGGTATCCCATTTCTCCCAATTCATCTAGTTGTGTTGTGTA
GCATTTCCCATGTCGCCGTGTAATNGTTGTCGCAGCGGTGGTAGTGTTTT
ACTCACTCATTTATGTTTTTTTTTTCTCCCCTATCCCCCGGGTAGGGTCG
GCTTCGCATTGATTATAATACATCCCCGGTTACGCCCATTGGTTGTTTTT
TTATTGTTTCACATGCACCCTTGCAGTGGTTTCTCGTTTGTTTTCACCTT
GGCGCTCTCAGCGGCGGTGTTTGTTATTATTATTCCGAATCGTTACGGCT
TCTGCGCGCCCCTTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a23.b1 MSMg01no477_a23.b1 CHROMAT_FILE:
MSMg01no477_a23.b1 PHD_FILE: MSMg01no477_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:23 2005
         (704 letters)



>mm_chr8_13970947_13972050
          Length = 1104

 Score = 1270 bits (657), Expect = 0.0
 Identities = 687/697 (98%), Gaps = 2/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagcaggctttccaatccagcctgattacatatggttttaggctagtctggcc 64
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagcaggcagtcaaatccagcctgattacatatggttttaggctagtctggcc 264

                                                                       
Query: 65  acctctacatttccctgtctttattgtcacaaaactgtagagaaaaaaaaaaaagaagaa 124
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 265 acctctacatttccctgtctttattgtcacaaaactgtagag-gaaaaaaaaaagaagaa 323

                                                                       
Query: 125 agaaaaaagagaagagaaaagaaagctatttcataaaccaactcagtgagcataaacact 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaaaacagagaagagaaaagaaagctatttcataaaccaactcagtgagcataaacact 383

                                                                       
Query: 185 gagacctaattgaatggatgctggcacatttacttgacaacattaagttcagtgagaaga 244
           |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagacctaattggatggatactggcacatttacttgacaacattaagttcagtgagaaga 443

                                                                       
Query: 245 gaaaggcaaagaaaggcaggttgcaggagaacaaggataaccatggcttgttagctttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaggcaaagaaaggcaggttgcaggagaacaaggataaccatggcttgttagctttct 503

                                                                       
Query: 305 acatgaagggtcatatgacacaaacagaaagaatctaaggcactttaatcttggacttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatgaagggtcatatgacacaaacagaaagaatctaaggcactttaatcttggacttgg 563

                                                                       
Query: 365 agcctctagaaccctaggagtctagaaccccaggagataaatgtttgctgtgtgaggcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agcctctagaaccctaggagtctagaaccccaggagataaatgtttgctgtgtgaggcat 623

                                                                       
Query: 425 tggcttatcttcttattgaggccacccagacaggccaagacagtcttacgacataaaacc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggcttatcttcttattgaggccacccagacaggccaagacagtcttacgacataaaacc 683

                                                                       
Query: 485 agagactcgcagggaataaagcgcttagtacagatagaaatctgcagttaacacgcacag 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 agagactcgcagggaataaagcgcttggtacagatagaaatctgcagttaacacgcacag 743

                                                                       
Query: 545 gcccactttactccctcaaaaaggacaccgcggttcccttagtagacttagaagccgagc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcccactttactccctcaaaaaggacaccgcggttcccttagtagacttagaagccgagc 803

                                                                       
Query: 605 atggacg-acgctgcactttacaaccccccatccatcccagatccacaccaatgagcgtt 663
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atggacggacgctgcactttacaaccccccatccatcccagatccacaccaatgagcgtt 863

                                                
Query: 664 catcaaggagcagagcccctggagtacccacaaaggg 700
           |||||||||||||||||||||||||||||||||||||
Sbjct: 864 catcaaggagcagagcccctggagtacccacaaaggg 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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