BAC Information

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BAC

Clone NameMSMg01-477B17
Chromosome8 (Build37)
Map Location 10,338,952 - 10,514,157
singlet/doubletdoublet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477B17.T7 (MSMg01no477_b17.b1)MSMg01-477B17.TJ (MSMg01no477_b17.g1)
ACCAG558538AG558539
length753770
length of high quality
(start - end)		663 (44 - 706)627 (75 - 701)
definitionCHROMAT_FILE: MSMg01no477_b17.b1 PHD_FILE: MSMg01no477_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:27 2005CHROMAT_FILE: MSMg01no477_b17.g1 PHD_FILE: MSMg01no477_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,338,952 - 10,339,610)(10,513,531 - 10,514,157)
sequence
NNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATCAGATCTTCAAAGAAGACCTAATACCAATACTCTTCAAACTATT
CCACAAAATAGAAACAGAAGGAACACTAGCCAATTCATTCTATGAAGCCA
CAGTTCCGCTGAGTATTCTCCCTTGGAGATGGAACAGTTTCTGTCTAATC
AGGAACTTTACACAATTTCCTTTCATAGAGGACTTCATAAGAGTTTTTTC
CTATTTCTATCATGTTTAATGTTCCAAATGAATTTGAAAAACTGGTTGAG
TGCATATACTTTTAGCTTCAGAAGACATCATGTATATTTAAGAGGCATTT
AACTATTATAAATTATTTTGATGACTTAAAAAAATTACAAATAGGTTCCT
GGGAGCTAGTCAGCCTCTTCCAACTCATAAGAACACATCTGTAAGCCTCA
CCAGATGTGGTCGCTGTCTGTGCCTTGGTCTTGGAACAGTCTCCAGACAG
TGAGATTCAGCTGCTCCCCATCTCCTGTGTTACAGCCCTGATTCATACAT
GGGGGGCAGAGTCTGTCACCAGTGCAAGCAATTCTCAGCCTTGCATTGCC
TCTGAGTCCGTGATGAGAGGCCAGCCAATGTTTGTTCTTTGTGAGGGCTC
CATGGAAAGGGTGCTCAGTAGAGCATGCCTCATAACCAATGGCTTTCCTG
GAAGCAGATGGAGAAGTGACTCTCTGACTTCTGTCCTCAGAGGAGCAGAT
GAG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAAATGTCTGTGTGGTTACAATGTG
TCCAGAAATCTCAGATAATGGATAAGGATATTCGTTTCAAAGTGGGAATA
TTGCTAAATAAACTGCAGACACAACAAGACCATTGGGACCTACAACATCT
AATGGACAGTTCTATGGGGGGAATAGTCAGAACGAAAGTAAACTTTTAAA
ACTATTTAGTCACTAATAAACATGCCACCATTAGTACATTCATATGACGT
ATCAATAAGTATTATGTTTCAAATACAAGCTACAGAGCTCCACAAGTAAA
CCGCACAGAGAATTACATCAGCCATTCAAGTGTTGTCCATACAATGGGTG
TTTGCTGTCAACCTGTCAGCTGGCTTAGGGCTGTCATTGAGCAGCCTTTT
CCTAACAATAAACTGTCTGCTGGGAATGGCAGAGAGTGAAGAAGCTAACA
GAGACAGAGATGAGACTTACAACCCCTATGCTCAGCTATGACATCTGGAG
CCTGATGAACAAAGACTGGGCCAAAGACAAACAGAAAGGGGAGCCTTAGA
GACTGAAGATTTAGTCAAACATCCCCAGTTCCTGGGAAAATCCCTCCTCT
TGTCAGAGTTGCTCTTTTGTTTCATTGTAACTTTTACATTTATTCTGGGC
ATAGAATCCTTGAGAACTCTGGGTAANGCACAGGGTGGGGAAATGGATGC
ACTGTACACCTTGAGATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_b17.b1 MSMg01no477_b17.b1 CHROMAT_FILE:
MSMg01no477_b17.b1 PHD_FILE: MSMg01no477_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:27 2005
         (663 letters)



>mm_chr8_10338748_10339810
          Length = 1063

 Score = 1274 bits (659), Expect = 0.0
 Identities = 659/659 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatcagatcttcaaagaagacctaataccaatactcttcaaactattccacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatcagatcttcaaagaagacctaataccaatactcttcaaactattccacaaa 264

                                                                       
Query: 65  atagaaacagaaggaacactagccaattcattctatgaagccacagttccgctgagtatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagaaacagaaggaacactagccaattcattctatgaagccacagttccgctgagtatt 324

                                                                       
Query: 125 ctcccttggagatggaacagtttctgtctaatcaggaactttacacaatttcctttcata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcccttggagatggaacagtttctgtctaatcaggaactttacacaatttcctttcata 384

                                                                       
Query: 185 gaggacttcataagagttttttcctatttctatcatgtttaatgttccaaatgaatttga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggacttcataagagttttttcctatttctatcatgtttaatgttccaaatgaatttga 444

                                                                       
Query: 245 aaaactggttgagtgcatatacttttagcttcagaagacatcatgtatatttaagaggca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaactggttgagtgcatatacttttagcttcagaagacatcatgtatatttaagaggca 504

                                                                       
Query: 305 tttaactattataaattattttgatgacttaaaaaaattacaaataggttcctgggagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaactattataaattattttgatgacttaaaaaaattacaaataggttcctgggagct 564

                                                                       
Query: 365 agtcagcctcttccaactcataagaacacatctgtaagcctcaccagatgtggtcgctgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcagcctcttccaactcataagaacacatctgtaagcctcaccagatgtggtcgctgt 624

                                                                       
Query: 425 ctgtgccttggtcttggaacagtctccagacagtgagattcagctgctccccatctcctg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtgccttggtcttggaacagtctccagacagtgagattcagctgctccccatctcctg 684

                                                                       
Query: 485 tgttacagccctgattcatacatggggggcagagtctgtcaccagtgcaagcaattctca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgttacagccctgattcatacatggggggcagagtctgtcaccagtgcaagcaattctca 744

                                                                       
Query: 545 gccttgcattgcctctgagtccgtgatgagaggccagccaatgtttgttctttgtgaggg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccttgcattgcctctgagtccgtgatgagaggccagccaatgtttgttctttgtgaggg 804

                                                                      
Query: 605 ctccatggaaagggtgctcagtagagcatgcctcataaccaatggctttcctggaagca 663
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctccatggaaagggtgctcagtagagcatgcctcataaccaatggctttcctggaagca 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_b17.g1 MSMg01no477_b17.g1 CHROMAT_FILE:
MSMg01no477_b17.g1 PHD_FILE: MSMg01no477_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:27 2005
         (627 letters)



>mm_chr8_10513331_10514357
          Length = 1027

 Score = 1166 bits (603), Expect = 0.0
 Identities = 621/627 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggataaggatattcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 827 ataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggatcaggatattcg 768

                                                                       
Query: 61  tttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattgggacctaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattgggacctaca 708

                                                                       
Query: 121 acatctaatggacagttctatggggggaatagtcagaacgaaagtaaacttttaaaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 707 acatctaatggacagttctatggggggaatagtcagaacgaaagtaaacatttaaaacta 648

                                                                       
Query: 181 tttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataagtatta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 647 tttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataaatatta 588

                                                                       
Query: 241 tgtttcaaatacaagctacagagctccacaagtaaaccgcacagagaattacatcagcca 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 587 tgtttcaaatacaagctacagagctccacaagtaaactgcacagagaattacatcagcca 528

                                                                       
Query: 301 ttcaagtgttgtccatacaatgggtgtttgctgtcaacctgtcagctggcttagggctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttcaagtgttgtccatacaatgggtgtttgctgtcaacctgtcagctggcttagggctgt 468

                                                                       
Query: 361 cattgagcagccttttcctaacaataaactgtctgctgggaatggcagagagtgaagaag 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 467 cattgagcagccttttcctaacaataaactgtttgctgggaatggcagagagtgaagaag 408

                                                                       
Query: 421 ctaacagagacagagatgagacttacaacccctatgctcagctatgacatctggagcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ctaacagagacagagatgagacttacaacccctatgctcagctatgacatctggagcctg 348

                                                                       
Query: 481 atgaacaaagactgggccaaagacaaacagaaaggggagccttagagactgaagatttag 540
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atgaacaaagactgggccaaggacaaacagaaaggggagccttagagactgaagatttag 288

                                                                       
Query: 541 tcaaacatccccagttcctgggaaaatccctcctcttgtcagagttgctcttttgtttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcaaacatccccagttcctgggaaaatccctcctcttgtcagagttgctcttttgtttca 228

                                      
Query: 601 ttgtaacttttacatttattctgggca 627
           |||||||||||||||||||||||||||
Sbjct: 227 ttgtaacttttacatttattctgggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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