Query= MSMg01no478_c17.b1 MSMg01no478_c17.b1 CHROMAT_FILE:
MSMg01no478_c17.b1 PHD_FILE: MSMg01no478_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:49 2005
(663 letters)
>mm_chr8_67918579_67919642
Length = 1064
Score = 1170 bits (605), Expect = 0.0
Identities = 650/665 (97%), Gaps = 2/665 (0%)
Strand = Plus / Plus
Query: 1 gcctca-aagagacagttatatctgggtcctttcagcaaaatcttgctaatgtatgcaat 59
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcctcacaagagacagctatatctgggtcctttcagcaaaatcttgctaatgtatgcaat 259
Query: 60 ggtgtcagcatttggaggctgattatgggatggatccccaggtatagcagtctctagatg 119
||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct: 260 ggtgtcagcatttggaggctgattatgggatggttccctgggtatggcagtctctagatg 319
Query: 120 gtccattctttcatctcagctccaaactttgtctctgtaactccttccctgggtgttttg 179
|||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 320 gtccatcctttcgtctcagctccaaactgtgtctctgtaactccttccctgggtgtgttg 379
Query: 180 ttcccaattctaagaaggggcaaagtgtccataccttggtcttcgttcttcttgagtttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcccaattctaagaaggggcaaagtgtccataccttggtcttcgttcttcttgagtttc 439
Query: 240 atgtgttttgcagattgtatctttcgtattctatgtttctgggctaatatccacttatca 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 atgtgttttgcagattgtatctttcgtattttatgtttctgggctaatatccacttatca 499
Query: 300 gtgagtacatatcatgtgagttcttttgtgattgggttacctcactcaggatgatgccct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgagtacatatcatgtgagttcttttgtgattgggttacctcactcaggatgatgccct 559
Query: 360 ccaggtccatccatttgcctaggaatttcataaattcattctttttaatagctgagtagt 419
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccaggtccatccatttggctaggaatttcataaattcattctttttaatagctgagtagt 619
Query: 420 actccattgtgtaaatgtaccacttagctcacccattgactgatctttccccatcctacc 479
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 actccattgtgtaaatgtaccacttagctcacccattgactgatctttccgtatcctacc 679
Query: 480 tcccgccatgctctaagctacctctggtgactgctatgctcatattcacaacttttctgt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcccgccatgctctaagctacctctggtgactgctatgctcatattcacaacttttctgt 739
Query: 540 gaaaatcttagttttatataattcatatttt-cattttccagttttatgattaaaagcat 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 740 gaaaatcttagttttatataattcatattttacattttccagttttatgattaaaagcat 799
Query: 599 ggacatttttattacatcacttcattgcactgagattctctgcagctcattaaaaataat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggacatttttattacatcacttcattgcactgagattctctgcagctcattaaaaataat 859
Query: 659 ggagt 663
|||||
Sbjct: 860 ggagt 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space: 688262
Effective search space used: 688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_c17.g1 MSMg01no478_c17.g1 CHROMAT_FILE:
MSMg01no478_c17.g1 PHD_FILE: MSMg01no478_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:49 2005
(669 letters)
>mm_chr8_68091358_68092428
Length = 1071
Score = 1056 bits (546), Expect = 0.0
Identities = 569/580 (98%), Gaps = 9/580 (1%)
Strand = Plus / Minus
Query: 1 tttaatgtattcaactaaaagatgctttaaaaataaagaatttgtttaatatccaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tttaatgtattcaactaaaagatgctttaaaaataaagaatttgtttaatatccaaagaa 514
Query: 61 tataagcttctataataaaataaagctatatggtttctttttttctataggcttccctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tataagcttctataataaaataaagctatatggtttctttttttctataggcttccctta 454
Query: 121 gtatagctttgaaatcctaataatcatgtaaagttgcattaaacaaattccaaataagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtatagctttgaaatcctaataatcatgtaaagttgcattaaacaaattccaaataagtc 394
Query: 181 agaattatttttctgttatgagttttactatcttttcttccattaaatacctaaatatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaattatttttctgttatgagttttactatcttttcttccattaaatacctaaatatat 334
Query: 241 gatatgcacttgtataatgcatataataaaagaa--tatcagtatctcaattaaatttta 298
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 333 gatatgcacttgtataatgcatataataaaagaatctatcagtatctcaattaaatttta 274
Query: 299 agaaatttaagtttttaataactattaacactattatttgcacactacttctttcaataa 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 273 agaaatttaagtttttaataactattaacactattatttgtacactacttctttcaataa 214
Query: 359 gacataaaccttgaattaattaattaattaattaattgatgtgactaggtataatagtgt 418
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gacataaaccttg----aattaattaattaattaattgatgtgactaggtataatagtgt 158
Query: 419 agccatgacacttgggagagaagatttgatgctgaagaccatctctaagctatatagtga 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 agccataacacttgggagagaagatttgatgctgaagaccatctctaagctatatagtga 98
Query: 479 gtttgagagcagtccaggatatatgagaccctatgtcaaaaaaaagggggggggagaaga 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 97 gtttgagagcagtccaggatatatgagaccctatgtc--aaaaaaggggggggg-gaaga 41
Query: 539 aaagaaagtaaaagaaaacctgaataaagaagatcaggta 578
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 aaagaaagtaaaagaaaacctgaataaagaagatcaggta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space: 699199
Effective search space used: 699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
