Query= MSMg01no478_h04.b1 MSMg01no478_h04.b1 CHROMAT_FILE:
MSMg01no478_h04.b1 PHD_FILE: MSMg01no478_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:10 2005
(666 letters)
>mm_chr8_11844180_11845245
Length = 1066
Score = 1187 bits (614), Expect = 0.0
Identities = 653/666 (98%)
Strand = Plus / Minus
Query: 1 gtaaaaggaacaagaggaaaggaggggcccaagaacatttagcactgtgcagaggaacag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 866 gtaaaaggaacaagaggaaaggaggggcccaagaacatttagcattgtgcagagggacag 807
Query: 61 gggctggaggccagcacagcaagggtccccacctacagcgtggccagtatggtctttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gggctggaggccagcacagcaagggtccccacctacagcgtggccagtatggtctttcct 747
Query: 121 ggctttggagtgtttacccctgttctctgatggaaattaagggtggatgcatcccacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ggctttggagtgtttacccctgttctctgatggaaattaagggtggatgcatcccacaca 687
Query: 181 gcttccataattaccattctgaaagtgaggacatatatgaggctccaagtgaaatttaat 240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 686 gcttccataattaccattctgaaagtgaggacataaatgagtctccaagtgaaatttaat 627
Query: 241 gaatgtttttatgtggtgctttagaaaaccctagaagttcagaaggcccaagtcctgaca 300
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaggtttggaggtggtgctttagaaaaccctagaagttcagaaggcccaagtcctgaca 567
Query: 301 tgggaaaacatgtccatgggcagaatggacacaacccttcactacaacgacctggttcgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 tgggaaaacatgtccatgggcagaatggacacaacccttcactacaacgacctggttagc 507
Query: 361 tgcttcttttgttctttcccactcctcacagatacctgaatgtctagaaatggctcatca 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 506 tgcttcttttgttctttcccactcctcacagatacctggatgtctagaaatggctcatca 447
Query: 421 ggagcaaggcagccagccctgcagctccttggatagcccaggcctgatcttagtgtggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggagcaaggcagccagccctgcagctccttggatagcccaggcctgatcttagtgtggtg 387
Query: 481 ctaaaatgacctcaggagaaacccagtcatatcgtgtccctcgactgtccccacggtcct 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 386 ctaaaatgacctcaggagaaacccagtcatatcgtgtccctcggctgtccccacggtcct 327
Query: 541 tggctaagacaccaccagcccggcccaatcagactctagctggctgcagccagcagctcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 326 tggctaagacaccaccagcccggcccaatcagactctagctggctgcagccagcagcgcc 267
Query: 601 ctgtccagcagctgtcttggaagggacgttctcacacccagtgttcataatctcagcctt 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 ctgtccagcagctgtcttggaagggacgttctcacacccagtgttcataatcccagcctt 207
Query: 661 ttccag 666
||||||
Sbjct: 206 ttccag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_h04.g1 MSMg01no478_h04.g1 CHROMAT_FILE:
MSMg01no478_h04.g1 PHD_FILE: MSMg01no478_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:10 2005
(675 letters)
>mm_chr8_11698397_11699468
Length = 1072
Score = 897 bits (464), Expect = 0.0
Identities = 571/616 (92%), Gaps = 22/616 (3%)
Strand = Plus / Plus
Query: 76 aggcacaggagttcatagagccgtaaggaaaacccgccagccagcaggagagcaaggcgt 135
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcataggagttcatagagccgtaaggaaaacccgccagccagcaggagagcaaggcga 320
Query: 136 gaacaccaggaaccggaaaggcgaatccggtaagccacg-----agggggt------ggg 184
|||||||||||||||||||| || ||| ||||||||||| |||||| |||
Sbjct: 321 gaacaccaggaaccggaaagccggatcgggtaagccacgggggcggggggtggggggggg 380
Query: 185 gaa-a---ggcactctcaggtcatcatcacctcaacactattaacacgtggtc-cttc-c 238
||| | |||||||||||| ||||| |||||||||||||||||| ||||| || | |
Sbjct: 381 gaagagggggcactctcagg---tcatcgcctcaacactattaacacatggtctctcctc 437
Query: 239 tctcctttttatgtggcactgatcttgacagttacatatccccaccagggaatgtggaca 298
||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctcc--ttcacgtggcactgatcttgacagttacatatccccaccagggaatgtggaca 495
Query: 299 ccactgtgagcttttaggagaacagtttgggaggatttaaaaagctgtggaaaggaaatc 358
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 496 ccactgtgagcttttgggagaacagtttggaaggatttaaaaagccatggaaaggaaatc 555
Query: 359 ggcacataggatgggtgcctgcccataggcccgtgtctcctgcagtgctaggctcaatag 418
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 556 agcacataggatgggtgcctgcccataggcccgtgtctcctgcagtgctgggctcaatag 615
Query: 419 catgttttattctctattagagcttctctggtttggctgcagtcttacaatgaaccccta 478
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 catgttttattctcggttagagcttctctggtttggctgcagtcttacaatgaaccccta 675
Query: 479 cttgccccctcaatattttgattaacatgggtatctaatcttttgacactgagacacaac 538
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 676 cttgccccctcaatattttgatttacatgggtatccaatcttttgacactgagacacaac 735
Query: 539 aatattgttgtctacaaagttcatgccccaaaccgaacaattgagttatcaaaaaggaaa 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 736 aatattgttgtctacaaagttcatgccccaaactgaacaattgagttatcaaaaaggaaa 795
Query: 599 ctgcaacaaaaatctcatgttgttttaactaaatttataatttttttggttggatgacat 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 ctgcaacaaaaatctcatgttgttttaactaaatttataatttttttggttggatgacag 855
Query: 659 tgatgactgttcctgg 674
||||||||||||||||
Sbjct: 856 tgatgactgttcctgg 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1072
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1062
Effective search space: 706230
Effective search space used: 706230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
