XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCGNGGAATTCT
CACCTGCCGAATACCGAATGGCAGAGAAACACCTGAAAAAATGTTCAACA
TCCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAGATTCCACTT
CACTCCAGTCAGAATGGCTAAGATCAAAAACTCTGGTGACAGCAGATGTT
GGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGC
AAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCAGAAAATT
GGACATAGTTCTATTGGAGGATCCTGCAATACCTCTCCTGGGCATATATC
CAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCCACTATGTTCATA
GCAGCCTTGCTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTC
AACAGAGGAATGGATACAGAAAATGTTGTACATTTACACAATGGAATACT
ACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGGCAAATGGATGG
ACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCACAAAGGAACTCG
CACAATATGTACTCACTGATAAGTGGATAATAGCCCAGAAACTTAGGATA
CCCCAGATATAAATTAATATTTTATAACAACTTTTTATATTTTATAATAT
AATATATAATATAAAATATTTTATN

ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTCTATGATATGTAATTGAAAATTTTATAT
TTTATGCTTTATTTTAATTTCATGTTATAAAGGATAACATTAATAAATCT
AATCAAATCTTAAAGTAGTATTGTATAAATTTTGTATAAAATTTTGAAAT
TTCTGGGTTACTCCATTTTACATATATTCTGTCATACTTTCTAAGTCATT
TTTGGGGGAGGGATGGAAAATAGCAAAATCTACCAAAAATAAACTACATT
AAAATAAATACTCATATTTGAGAGCAAAAGAGTTTCATGCAATCGTATAT
GTATGTATGTATGTGTGTGTATGTATGTATATATATGTATATATATATGA
ACATTTAGTCATTTATATAGTATTTGTTGTTTCTACCCCTATAAACAAAA
GATGGTGACTGGTTTTAGACTGTGCATAAATTTCATTTAAATCTTAACAA
ATATAAAAGAACAGCTCATTCTCTGTGCAACAGAAATTACCCCAAATTCA
TGATACTTGAAAGGATACTGTAAGCTGTTAGTTTTGTACACTAATCCTCA
CGGCACTCCTTTAAGATTGTGACTGGAGCAGCTTTTATCCTTTCTGGAAA
CAGCTCTGAGGTAGCTTCTGCATATAGAGAATGTGTAATATAATGTTTGG
ACAGGATCTTTGCGTTCTCTAAAACATGGTCTGA

Query= MSMg01no478_k20.g1 MSMg01no478_k20.g1 CHROMAT_FILE:
MSMg01no478_k20.g1 PHD_FILE: MSMg01no478_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:27 2005
         (425 letters)



>mm_chr8_6206910_6207734
          Length = 825

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/433 (96%), Gaps = 12/433 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttctatgatatgtaattgaaaattttatattttatgctttattttaatttcatgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttctatgatatgtaattgaaaattttatattttatgctttattttaatttcatgttat 260

                                                                       
Query: 61  aaaggataacattaataaatctaatcaaatcttaaagtagtattgtataaattttgtata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggataacattaataaatctaatcaaatcttaaagtagtattgtataaattttgtata 320

                                                                       
Query: 121 aaattttgaaatttctgggttactccattttacatatattctgtcatactttctaagtca 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattttgaaatttctggtttactccattttacatatattctgtcatactttctaagtca 380

                                                                       
Query: 181 tttttgggggagggatggaaaatagcaaaatctaccaaaaataaactacattaaaataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttgggggagggatggaaaatagcaaaatctaccaaaaataaactacattaaaataaa 440

                                                                       
Query: 241 tactcatatttgagagcaaaagagtttcatgcaatcgtatatgtatgtatgtatgtgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 441 tactcatatttgagagcaaaagagtttcatgcaatcgtatatgtatgtatgt----gtgt 496

                                                                       
Query: 301 gtatgtatgtatatatat--gtatatatatat------gaacatttagtcatttatatag 352
           ||||| ||||||||||||  ||||||||||||      ||||||||||||||||||||||
Sbjct: 497 gtatgcatgtatatatatatgtatatatatatataaatgaacatttagtcatttatatag 556

                                                                       
Query: 353 tatttgttgtttctacccctataaacaaaagatggtgactggttttagactgtgcataaa 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tatttgttgtttctacccctataaacaaaagatggtgactggttttagactgtgcataaa 616

                        
Query: 413 tttcatttaaatc 425
           |||||||||||||
Sbjct: 617 tttcatttaaatc 629


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)