Query= MSMg01no478_l05.b1 MSMg01no478_l05.b1 CHROMAT_FILE:
MSMg01no478_l05.b1 PHD_FILE: MSMg01no478_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:28 2005
(648 letters)
>mm_chr8_63953125_63954176
Length = 1052
Score = 1151 bits (595), Expect = 0.0
Identities = 638/659 (96%), Gaps = 13/659 (1%)
Strand = Plus / Plus
Query: 3 cccatttttaatagggttatctggtttcctagattttaatttcttgagttctttgtatat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cccatttttaatagggttatctggtttcctagattttaatttcttgagttctttgtatat 253
Query: 63 attggatattagccctctgtcggattagtaaagatcttttctcaatttgttggttgccat 122
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 254 attggatattagccctctgtcggattagtaaagatcttttcccaatctgttggttgccat 313
Query: 123 tttgtcctattgacagtgtcctttgcctcacaaaagctttgcaattttatgaggttccag 182
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttgtcctattgacagtgttctttgcctcacaaaagctttgcaattttatgaggttccag 373
Query: 183 ggccatgatttcttgactcctaacctgtgatgacttttcttcctccttacatctctctct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggccatgatttcttgactcctaacctgtgatgacttttcttcctccttacatctctctct 433
Query: 243 ttctctc--------tttcc-ccgactccctaagcccaggaaccctaaaaccagcctgtc 293
||||| | ||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct: 434 ttctcccccccccattttcctctgactccctaggcccaggaaccctaaaaccagcctgtc 493
Query: 294 tcttctgcccagcgattggttgttggcatctttaccaatcagaaataacttgggggcaag 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tcttctgcccagcgattggttgttggcatctttaccaatcagaaataacttgggggcaag 553
Query: 354 gttacaggttattccttggtctatgtgaggaggaaccaatgttagcattggaatacaagc 413
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gctacaggttattccttggtctatgtgaggaggaaccaatgttagcattggaatacaagc 613
Query: 414 atcatcaggacaacccactacaggtagaattgtagtatccaaccttgaaggtgctgcctt 473
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atcatcaagacaacccactacaggtagaattgtagtatccaaccttgaaggtgctgcctt 673
Query: 474 cctgccctggtctacggggtttggagagtgcaggcatgcaccactgtgcctgacctaaac 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cctgccctggtctacggggtttggagagtgcaggcatgcaccactgtgcctgacctaaac 733
Query: 534 agtccttttttttttt----caatgctttcagtttgcctatggcaaagaaaaactgggca 589
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agtcctttttttttttttttcaatgctttcagtttgcctatggcaaagaaaaactgggca 793
Query: 590 gtcacattgcattatgtgctccagatgtcacaagaaaataatcaggttaggtggcttaa 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtcacattgcattatgtgctccagatgtcacaagaaaataatcaggttaggtggcttaa 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1052
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1042
Effective search space: 664796
Effective search space used: 664796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_l05.g1 MSMg01no478_l05.g1 CHROMAT_FILE:
MSMg01no478_l05.g1 PHD_FILE: MSMg01no478_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:28 2005
(659 letters)
>mm_chr8_64097762_64098820
Length = 1059
Score = 1004 bits (519), Expect = 0.0
Identities = 554/573 (96%), Gaps = 14/573 (2%)
Strand = Plus / Minus
Query: 95 cagctctgtctgtctgtctgtctgtctgtctctgtctctctc--tctccctctttccttc 152
||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 1059 cagctctgtctgtctgtctgtctgtctgtctgtgtctctctctatctccctctttccttc 1000
Query: 153 cttctttcttttcattgaaaataggtttcttctctcattcaagacatcccaaccacagcc 212
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 999 cttctttcttttcattgaaaataggtttcttctctcattcaagacaccccaaccacagcc 940
Query: 213 ttcccttcctccagttctcccagttcctca------ttttttctcctctccctccgtttc 266
|||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 939 ttcccttcctccagttctcccagttcctcaccaccg------ctcctttccctccgtttc 886
Query: 267 ccttcagaaaaggacaggcctccaagatggccaccatagcttttatcagaatcatgaagt 326
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 ccttcagacaaggacaggcctccaagatggccaccatagcttttatcagaatcatgaagt 826
Query: 327 tggcagtggtgttaggcattcaagtcctgtagcttacttatggactgtgtatcctgtaac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 tggcagtggtgttaggcattcaagtcctgtagcttacttatggactgtgtatcctgtaac 766
Query: 387 tcagtgttttatgataatctttgaactccttaagcagtgagtatcttgtgattatagaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 tcagtgttttatgataatctttgaactccttaagcagtgagtatcttgtgattatagaaa 706
Query: 447 gaagaagcacatgttaaataattggaatcagaacatctatttgatggatgggttcttggg 506
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gaataagcacatgttaaataattggaatcagaacatctatttgatggatgggttcttggg 646
Query: 507 agaacatgtgcaataaattttggatgtctgactccttttatccaataaagactatggcaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agaacatgtgcaataaattttggatgtctgactccttttatccaataaagactatggcaa 586
Query: 567 cttaccttaaacattgtattcgtttcccagaggcagaatgtttaaatatattccctacag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cttaccttaaacattgtattcgtttcccagaggcagaatgtttaaatatattccctacag 526
Query: 627 gtagccactataactgtttcctgtgttgctttc 659
|||||||||||||||||||||||||||||||||
Sbjct: 525 gtagccactataactgtttcctgtgttgctttc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
