BAC Information

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BAC

Clone NameMSMg01-478P01
Chromosome8 (Build37)
Map Location 109,361,014 - 109,361,557
singlet/doubletsinglet
Overlap geneTmco7
Upstream geneTsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478P01.T7 (MSMg01no478_p01.b1)MSMg01-478P01.TJ (MSMg01no478_p01.g1)
ACCAG559937AG559938
length747747
length of high quality
(start - end)
640 (60 - 699)597 (62 - 658)
definitionCHROMAT_FILE: MSMg01no478_p01.b1 PHD_FILE: MSMg01no478_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:46 2005CHROMAT_FILE: MSMg01no478_p01.g1 PHD_FILE: MSMg01no478_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTAAACGACTCACTATTCAAAGAGGAGCCGCGGAATTCAGATGTTT
CTGATAATGGAGCAAGCACTCACCCCCCAAGCAACCTCCCAGCCCCCCAG
AATCAATAATCTAATACAAATAAGGAAGAGGCAGCACAGGATAGCTGAAA
AACAAAACAATTAAAAGACCTAAAAAAGCTGACAGGAGCCTTAGTAGGGA
TCTACCATTACTTCAGTGTCAATGTGTTAAGAGGCTGCCCAAGATGCAGC
TAAGTGCCAATGACAAGGCAAAGAGACTTGGACTATATTTCTTGGAATTT
TCTTAATTATGAACAAAGAAGTTTTCCCAGAACAGAGAATAGCTCTTACA
TGTACATTTGTACTGTGTCTCCCAGGCAAGTGAGATGGCTATGCCGTCTC
TACAACCTGAGTTGGGTCCCCTAGAACCTACATAAAAGCTGGACTTGGGA
GCACGCATTACATTCTCAGCACAGGGAGAGCCTTCTCCAGAACTCCCCAC
CCCACCAGCTAGCCTACAGCGTGAAGCTCAGTTGAGACAAAAAGAAAAAC
CTGCCTCAACAAGGTGGCAGGCTTCTGTTTCCTCATTCCAGTGACACAAT
ACCCGCTAACTCAGGAGAACTGGAGACCAGAAGAAAGCCCAGTGGTGAAG
CAAAGGGGTCCTGGGAAGCCATGTGTGTCTGAACACATCTCTAACAGTTC
ACATGTTTCTCCAGTACAGCCTCAGGCTTGGTCAGGTAAACCCTTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGAACATCATTATCAGTATTTATGTAATCATTAATTCTT
CTACACAGCATTACTGTATGAAAGCACATCTTCATATTGATTCGGCAGGA
AATGTGCCCAATTGGGTGGGCTGATGCCCAGGGATCATTAGGCTATGTAA
TAGTGACAGGAAAGGCATATCAGCAACAAGATACAATCCTGGGATGAAGT
CTCTAAGGACCCTGTGTTCTCAGAGCTCACCCATTGTACTTATTCAGAAG
GGTGGTTTATCTCCAGAAAGCTCACTTGTATGCCTTAGCCTTTCCTAGAT
GACTTCTGACTTATACACATACATACACATAAAGTGAAAGATGTTGTCTT
GGCTCGGGAGATGGCTTAGTTGTTAAGAGCACTGGTTGTTCTTGTAAAGG
ACCTGAGTGTGGTTTTCCATACTGACAAGGTAGCTTATAATCATCTGTAA
CTCAGGTTCCAAGGAACTCAGTGTCCTCCATGGGTACCAGCTCACATATG
GTACACATACCTACCTGGAGCCAAAACACTTATATACATAAAAAAGGGAG
AAAAGTTGGGCACTAGAGAGATGGCTTAGCAGTTAAGAGCACTGGCTGCT
CCTTCAAAGGACCCTGGTTTAATTTGTAGCCCACATGGCAGCTCAGAACT
GTCTGTAACTCCAGTTCCTAAGGATTCGACACTCTTACTCAGACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_p01.b1 MSMg01no478_p01.b1 CHROMAT_FILE:
MSMg01no478_p01.b1 PHD_FILE: MSMg01no478_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:46 2005
         (640 letters)



>mm_chr8_109361014_109362052
          Length = 1039

 Score = 1000 bits (517), Expect = 0.0
 Identities = 538/545 (98%), Gaps = 1/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcaagcactcaccccccaagcaacctcccagccccccagaatcaataatctaatacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 544 gagcaagcactcaccccccaagcaacctcccagccccccagaatcagtaatctaatacaa 485

                                                                       
Query: 61  ataaggaagaggcagcacaggatagctgaaaaacaaaacaattaaaagacctaaaaaagc 120
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 484 ataaggatgaggcagcacaggatagctgaaaaacaaaacaa-taaaagacctaaaaaagc 426

                                                                       
Query: 121 tgacaggagccttagtagggatctaccattacttcagtgtcaatgtgttaagaggctgcc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 425 tgacaggagccttagtagggatctaccattacttcaatgtcaatgtgttaagaggctgcc 366

                                                                       
Query: 181 caagatgcagctaagtgccaatgacaaggcaaagagacttggactatatttcttggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caagatgcagctaagtgccaatgacaaggcaaagagacttggactatatttcttggaatt 306

                                                                       
Query: 241 ttcttaattatgaacaaagaagttttcccagaacagagaatagctcttacatgtacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcttaattatgaacaaagaagttttcccagaacagagaatagctcttacatgtacattt 246

                                                                       
Query: 301 gtactgtgtctcccaggcaagtgagatggctatgccgtctctacaacctgagttgggtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gtactgtgtctcccaggcaagtgagatggctatgccgtctctacaacctgagttgggtcc 186

                                                                       
Query: 361 cctagaacctacataaaagctggacttgggagcacgcattacattctcagcacagggaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cctagaacctacataaaagctggacttgggagcacgcattacattctcagcacagggaga 126

                                                                       
Query: 421 gccttctccagaactccccaccccaccagctagcctacagcgtgaagctcagttgagaca 480
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 125 gccttccccagaactccccaccccaccagctagcctacagtgtgaagctcagttgagaca 66

                                                                       
Query: 481 aaaagaaaaacctgcctcaacaaggtggcaggcttctgtttcctcattccagtgacacaa 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 65  aaaagaaaaacctgcctcaacaaggtggcaggcttccgtttcctcattccagtgacacaa 6

                
Query: 541 taccc 545
           |||||
Sbjct: 5   taccc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space:   648270
Effective search space used:   648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)