Query= MSMg01no479_b10.b1 MSMg01no479_b10.b1 CHROMAT_FILE:
MSMg01no479_b10.b1 PHD_FILE: MSMg01no479_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:57 2005
(637 letters)
>mm_chr8_14193134_14194171
Length = 1038
Score = 752 bits (389), Expect = 0.0
Identities = 469/519 (90%), Gaps = 38/519 (7%)
Strand = Plus / Minus
Query: 5 gaattcttagatatccagaaaaagaaaattgcattcatcaacattccatccctgagtcta 64
||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 519 gaattcttagaaatgaagaaaaagaaaattgccttcatcaacattccatccctgagtcta 460
Query: 65 agtttacagtatccaat-aaactggtgtttgacaaagtcagtgcataaaattaaatggca 123
||||||||||||||| | ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 459 agtttacagtatccattaaaactggtgtttgacaaagtcagtgcacaagattaaatggca 400
Query: 124 atgctaaagggaaagatgtgagcactgcccaggcttgtcttagggaccatcctcactctg 183
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtgctaaaggtaaagatgtgagcactgcccaggcttgtcttagggaccatcctcactctg 340
Query: 184 caggaagcatgagaggcttcctcagaacaggtcgcaaggggagcgagacacccagcatgt 243
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 339 caggaagcatgagaggcttcctcagaacaggtcgaaaggggagggagacacccagcatgt 280
Query: 244 gacagatcagctttatcatgctaactcatttgattctctacaatgtgggtaaaaccacct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gacagatcagctttatcatgctaactcatttgattctctacaatgtgggtaaaaccacct 220
Query: 304 gcattccatagaggc-----tgtggcaaaacttttcctggggagac-------------- 344
||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 219 gcattccatagaggctgtcgtgtggcaaaacttttcctggggagactccacacacatcta 160
Query: 345 ------------------tccacaatagaccaaaacatggatgccaccaaagtctaactt 386
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctcagccaagacagggagtccacaatagaccaaaacatggatgccaccaaagtctaactt 100
Query: 387 gatgaaccatgaattttactggggttttttacagggatatgggcagtgggttcacttata 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 gatgaaccatgaattttactggggttttttacagggatatgggcagtgggttcacttata 40
Query: 447 ggagcagctacatcatgtaggtccttcccagggcagtga 485
||||||||||||||||||||| |||||||||||||||||
Sbjct: 39 ggagcagctacatcatgtaggcccttcccagggcagtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space: 644556
Effective search space used: 644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_b10.g1 MSMg01no479_b10.g1 CHROMAT_FILE:
MSMg01no479_b10.g1 PHD_FILE: MSMg01no479_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:57 2005
(240 letters)
>mm_chr8_14048528_14049167
Length = 640
Score = 410 bits (212), Expect = e-119
Identities = 233/240 (97%)
Strand = Plus / Plus
Query: 1 cttcctgaaaaagcagatacactgaagtaagttccaaattttctaggttaatatttatct 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctgaaaaagcagaaacactgaagtaagttccaaattttctaggttaatatttatct 260
Query: 61 aaatacttctctgtgtgtgaagttcaagctagacaaaattccagcacatggaaggacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaatacttctctgtgtgtgaagttcaagctagacaaaattccagcacatggaaagacaca 320
Query: 121 tgggcatggacacacagacacatgcactctcacccatacttgagaaactgtttgcaatca 180
|||||| |||||||||||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct: 321 tgggcacagacacacagacacatgcattctcacccatactcgaggaactgtttgcaatca 380
Query: 181 gcggctgctgggggaatggaaatcagttttcttcaacggagtggcactgggtaagtcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcggctgctgggggaatggaaatcagttttcttcaacggagtggcactgggtaagtcagt 440
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
