BAC Information

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BAC

Clone NameMSMg01-479C05
Chromosome8 (Build37)
Map Location 85,094,890 - 85,095,282
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479C05.T7 (MSMg01no479_c05.b1)MSMg01-479C05.TJ (MSMg01no479_c05.g1)
ACCAG560089AG560090
length755747
length of high quality
(start - end)
705 (51 - 755)449 (80 - 528)
definitionCHROMAT_FILE: MSMg01no479_c05.b1 PHD_FILE: MSMg01no479_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:01 2005CHROMAT_FILE: MSMg01no479_c05.g1 PHD_FILE: MSMg01no479_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCAAGGCATATCCCGAAACATAATAAAATCAATATACTGCAA
TCCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAAGCAATCCCAC
TAAAATCAGGGATTGGACAAGTCTGCCCACTCTCTCTGTACCTATTCAAT
ATAGTACTTGAAGTCCTAGCCAAAGCAATTAGACAATGAAAGGCGATCAA
AGGGATATAAATTGGAAAGGAAGAAATCAAAATATCACTATTTACAGATG
ACATGATAGTATATATTAGACACCCCCAAAATTCCATATGAGAACTGCTA
ATCCTGATAAACAAATTTAGTGACATATATGGATATAACTCAAACAAATC
AGTAGTCGTTCTCTACACAAAGGATAAGGCTGAGAAAAGAAATTAGAGAA
ACAACATCTTTTACAATAGTCACAAATAATATAAAATACCTTAGTGTGAC
TCTAACTAAGCAAGTGAAAGGTCTGTATGATAAGAACTTCAAGTCTCTGA
AGGAAGAAATCAAAGAAGATCTCAGAAGATGGTAAGATCTCCCATGCTCA
TGAATTGGCAGGATTAATATAGTCAAAATGTATATCTTACTAAAAGCAAT
CTACAGATTCAATGCAATCACCATCAAAATTCCAACTCATTTCTTCAGAT
TTAGAAAGGGCAATTTGCAAGTTCATCTGGAATAACAAAAAACCTAGGAC
AGCAA
NCACGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGTAAAATGTACTTGTTA
TAATGAAATAACCCCCCCCACACACACACACACATACACCCTTATTTTTA
ATTTTTGGTTGTGGGCTTAACCTTCAATGGCTAAGCCATTTCTCCAGATC
TCTTTTTACTTAAAAAAAATCCAGTTATGAGTCATTCCACTCTGCAACTC
TTTCACATGCGCTTTTTTTCTTTTTTTTTTTCCATTTTTATTAGGTATTT
AGCTCATTTACATTTCCAATGCTATTTCTATTGTCCCCCATACCCACCCA
CCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCCCC
TGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT
GATGGCAGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGATC
TCTGGGGTACTGGTTAGTTCATAATGCTGCCCCACCTATAGGGTTGCAGA
TCCCTTCAGCTCCTTGGGTTCTTTCTCTAGCTCCCCCCTTGGGAGCCCTG
TGATCCATCCCTTAGCTGACTGTGAGCATCCCTTTCTGTGTTTGTTAGGT
CCCGGTTTATTTTTTTTTTTATACCGCTACACCTGGGGTCCCTTCAATAT
AACCCCGCTTAGTGTCCGCACTGCCGCCAGCCTTTTGTATGCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_c05.g1 MSMg01no479_c05.g1 CHROMAT_FILE:
MSMg01no479_c05.g1 PHD_FILE: MSMg01no479_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:01 2005
         (449 letters)



>mm_chr8_85094890_85095738
          Length = 849

 Score =  714 bits (369), Expect = 0.0
 Identities = 387/393 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgtaaaatgtacttgttataatgaaataaccccccccacacacacacacacatacac 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 393 ctttgtaaaatgtacttgttataatgaaataaccccccccccacacacacacacatacac 334

                                                                       
Query: 61  ccttatttttaatttttggttgtgggcttaaccttcaatggctaagccatttctccagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ccttatttttaatttttggttgtgggcttaaccttcaatggctaagccatttctccagat 274

                                                                       
Query: 121 ctctttttacttaaaaaaaatccagttatgagtcattccactctgcaactctttcacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctctttttacttaaaaaaaatccagttatgagtcattccactctgcaactctttcacatg 214

                                                                       
Query: 181 cgctttttttctttttttttttccatttttattaggtatttagctcatttacatttccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cgctttttttctttttttttttccatttttattaggtatttagctcatttacatttccaa 154

                                                                       
Query: 241 tgctatttctattgtcccccatacccacccacccccaatcccctacccacccactccccc 300
           ||||||  | |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgctataccaaaagtcccccatacccacccacccccaatcccctacccacccactccccc 94

                                                                       
Query: 301 tttttggccctggcattcccctgtactggggcatataaagtttgcaagtccaatgggcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tttttggccctggcattcccctgtactggggcatataaagtttgcaagtccaatgggcct 34

                                            
Query: 361 ctctttccagtgatggcagactaggccatcttt 393
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ctctttccagtgatggcagactaggccatcttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)