BAC Information

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BAC

Clone NameMSMg01-479F21
Chromosome8 (Build37)
Map Location 67,633,521 - 67,633,806
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388
Downstream geneLOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479F21.T7 (MSMg01no479_f21.b1)MSMg01-479F21.TJ (MSMg01no479_f21.g1)
ACCAG560265AG560266
length761811
length of high quality
(start - end)		607 (50 - 656)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no479_f21.b1 PHD_FILE: MSMg01no479_f21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:20 2005CHROMAT_FILE: MSMg01no479_f21.g1 PHD_FILE: MSMg01no479_f21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTTACGAATACCGAATGGCAGAGAAGCACCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCC
TCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGAAACTCACACAATATGTACTCACTGATAAGTCGATATTAGCCCCAA
ACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTC
AAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCCTCCTAGATTTNG
GAACAAACACC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGAAGACACAGAAAGAGTGGCCACATC
TTCCTACCACAACTCACTTCAAGTCCTTCATCTGCTCTGTGAGGAAGTAA
TTGCCAGTCTCTTTCTTAAGGCCTCAGGTTCCTCTGAGTGTGGTATTCAA
ATGATCTCAACACATTCTCTAGGTGGAATTCTGGGCTAGGTCTATCTGTC
TGCCCGTCTCTGTCTCTCTGTCTCTGCCTACTTGACTTGGCTGGTCATCC
CTCTCCCTCTCCCCCCACCCCTTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTATGTGTGTGNNNNNNNNNNNNNNNNNNTTNNNNNNNNTNTTTN
TNNTTTTTTTTTTTTCCCCTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTN
NNTTTTTTTTTTTTTTTTTTTTNTTTNTTTNTTTNTTTTTTTTTTTTTTT
TTTTNTTTTTTCTTTTNNNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTNTTTNTTTNTTTTTTTTTTTTNTTTTTNTTTNTTNTTTNNTNNN
TTTTTTCTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTN
TTNTTNNNNNTTTTNTNNTNTTTTTTTTTTTTTTTTTTTTTTNCCTNTNT
TTTTTTNNTTTTTTNTNTTTTTTTTTTTTTTTCTTCCCCCCCCCTTTTTT
CTCCCCTTTTTTCCTCTCTTCCCTTTTTTCTTTTCTTTTTTTTCTTCTTC
TTTTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_f21.g1 MSMg01no479_f21.g1 CHROMAT_FILE:
MSMg01no479_f21.g1 PHD_FILE: MSMg01no479_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:20 2005
         (295 letters)



>mm_chr8_67633321_67634013
          Length = 693

 Score =  447 bits (231), Expect = e-130
 Identities = 276/299 (92%), Gaps = 19/299 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaagacacagaaagagtggccacatcttcctaccacaactcacttcaagtccttcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaagacacagaaagagtggccacatcttcctaccacaactcacttcaagtccttcatct 260

                                                                       
Query: 61  gctctgtgaggaagtaattgccagtctctttcttaaggcctcaggttcctctgagtgtgg 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctgtgaggaagtaattgtcagtctctttcttaaggcctcaggttcctctgagtgtgg 320

                                                                       
Query: 121 tattcaaatgatctcaacacattctctaggtggaattctgggctaggtctatctgtctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattcaaatgatctcaacacattctctaggtggaattctgggctaggtctatctgtctgc 380

                                                                       
Query: 181 ccgtctctgtctctctgtctctgcctacttgacttggctggtcatccctctccctctccc 240
           ||||||  ||||||||||||||||||  |||  |   ||| |||||||||||||||    
Sbjct: 381 ccgtct--gtctctctgtctctgcctgtttg--t---ctgttcatccctctccctc---- 429

                                                                      
Query: 241 cccaccccttgtgtgtgtgt--gtgtgtgtgtg--tgtg--tgtgtgtgtatgtgtgtg 293
             ||||||||||||||||||  |||||||||||  ||||  ||||||||||||||||||
Sbjct: 430 --caccccttgtgtgtgtgtatgtgtgtgtgtgcgtgtgcgtgtgtgtgtatgtgtgtg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 693
Length adjustment: 9
Effective length of query: 286
Effective length of database: 684
Effective search space:   195624
Effective search space used:   195624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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