BAC Information

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BAC

Clone NameMSMg01-479I19
Chromosome8 (Build37)
Map Location 62,491,586 - 62,491,952
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665116, LOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479I19.T7 (MSMg01no479_i19.b1)MSMg01-479I19.TJ (MSMg01no479_i19.g1)
ACCAG560402AG560403
length772781
length of high quality
(start - end)
616 (42 - 657)655 (72 - 726)
definitionCHROMAT_FILE: MSMg01no479_i19.b1 PHD_FILE: MSMg01no479_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:35 2005CHROMAT_FILE: MSMg01no479_i19.g1 PHD_FILE: MSMg01no479_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTATTTTCGTACCCCATTTTTTAATAGGATTGTTTGTTTCTCTGGGAT
CTAACTTCTTGAGTTCTTTGTATATAGTGGATATTAGCCCTCTATCAGAT
TTAGGATTGGTTGGTTGCCTTTTTCTATTATTGACAGTGTCCTTTGACTT
ATAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGCTTCATGATCTTA
AAGCACAAGACTTTGGTGCTTTGTTCAGGAAATTTTCCCCTGTCCCCATA
TCTTCGAGACTCTTTTTCACTTTCTCCTCTATTTGTTTCAGTGTATCTGG
TTTTATGTGGAGGTCCTTGATCCACTTAGAACTGAGATTTTTACAATAAG
GTAAGAATGAATCAATTTGTATTCTTCTACATGCTATCTACCGGTTGAAC
CAGAACCATTTGTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAG
CTCCTTTTTCAAAGATCAAGTGACCATATGTGTGTAGGTTCATTTCTGGG
TCTTCAATTTTATTCCATTGATCTACCTGCCTCTTATTGTACCAGTACCA
TGCAGCTTTTATCACAATTGCTCTGTAGTACAGTTTGAGGTTAGGGATGG
TGATTCTACCAGAAGTTCTTTTATTGTTGAACATAGTTTTTGCTATCCTA
GGGTTTTTTTTTGTTTGGTTGGTTTTTGGTTTTTGCTTTTTTGCGCGCTT
TTTTTGCAATTCCCGATGAATT
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTCTGTGTCTTTATGAAGCATACAATA
TAATTTAAGTTTTCTATTCTGTGAGTCTTAAATAAACTTAAGTTTTTATT
AAAGAATTTAGTATGTTCCCTTAAATAATATTGTAGAGTATGAAAACGTG
GTTTTGACTGGGTACAGAGAACATTTGAGGATTTGGAAGATACGGGAATA
TTGAATGAAACATCATGAAAATCCTACCATTTCTTCCTAGCCTAAACCTT
AAGGCAAGCAATTCTTTTTTTACCTCCATGGAACTGGTGACTGGCAGGCT
TTGCATTTCCTTTTTTTATCATTTCACCTGACCAAATGGAGTTCTTTAAT
CACAGTATTAGAAAGGAAATGTCCTCACCATGATTTTAAATCACTATTTT
TTGTATGTTTGCTTTAAAGGATCTTATTATTACATTTCTTAGAAGAGAAG
AGAATTTATTAGCTATACACTTAAAGTCATAACCCATCATTGAGGGAAGT
CATGAAGCAGAACACAGCTTGCAAGACCACCAGCCTAAGGTTGATGCTTC
CCATAGTGGTCTAGGCCTTTCAGCCGTGATAAGCAATCAAGATAACTCCC
CACAGTCATGTACACAGTTATATAGGTATTGGTGTCCTCCTCTTTCTGCA
TCCTCTTCCCTGCTGATCTCTGAGCCCTGCAAGGTGGATTGGATGGAGAT
AGCCCTTTTAGACTAAGTATGCTTAGTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_i19.g1 MSMg01no479_i19.g1 CHROMAT_FILE:
MSMg01no479_i19.g1 PHD_FILE: MSMg01no479_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:36 2005
         (655 letters)



>mm_chr8_62491386_62492440
          Length = 1055

 Score =  656 bits (339), Expect = 0.0
 Identities = 360/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctctgtgtctttatgaagcatacaatataatttaagttttctattctgtgagtcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctctgtgtctttatgaagcatacaatataatttaagttttctattctgtgagtcttaa 260

                                                                       
Query: 61  ataaacttaagtttttattaaagaatttagtatgttcccttaaataatattgtagagtat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ataaacttaagtttttattaaagaatttagtatgttctcttaaataatattgtagagtat 320

                                                                       
Query: 121 gaaaacgtggttttgactgggtacagagaacatttgaggatttggaagatacgggaatat 180
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gaaaacgtggttttgactggttacagagaccatttgaggatttggaagatacgggaatat 380

                                                                       
Query: 181 tgaatgaaacatcatgaaaatcctaccatttcttcctagcctaaaccttaaggcaagcaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaataaaacatcatgaaaatcctaccatttcttcctagcctaaaccttaaggcaagcaa 440

                                                                       
Query: 241 ttctttttttacctccatggaactggtgactggcaggctttgcatttcctttttttatca 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcatttacctccatggaactggtgactggcaggctttgcatttcctttttttatca 500

                                                                       
Query: 301 tttcacctgaccaaatggagttctttaatcacagtattagaaaggaaatgtcctcaccat 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcacctgaccaaatggagctctttaatcacagtattagaaaggaaatgtcctcaccat 560

                  
Query: 361 gatttta 367
           |||||||
Sbjct: 561 gatttta 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)