Query= MSMg01no479_o14.b1 MSMg01no479_o14.b1 CHROMAT_FILE:
MSMg01no479_o14.b1 PHD_FILE: MSMg01no479_o14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:04 2005
(662 letters)
>mm_chr8_5752423_5753483
Length = 1061
Score = 1098 bits (568), Expect = 0.0
Identities = 647/690 (93%), Gaps = 29/690 (4%)
Strand = Plus / Plus
Query: 1 agatataagcgtgtatgagtcagccaaaggagtttacaatcatttacatcttacattcag 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agataaaagcgtgtatgagtcagccaaaggagtttacaatcatttacatcttacattcaa 260
Query: 61 tgcttagcctcgctttagagtgttcagatcctcctctgggactgatggccaggagacact 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgcttagcctcgctttagagtgttcagatcctcctctgggacggatggccaggagacact 320
Query: 121 cctgagattgtactttgtcactcattttgcttatattgatgagaaaagaattgagaattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgagattgtactttgtcactcattttgcttatattgatgagaaaagaattgagaattg 380
Query: 181 acttctagtatgatttcacttctgagtttgctctgatatgtgcttatctttcctttattt 240
| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct: 381 atttctagtatgacttcacttctgag-tagctcttatatgtgcttatctttcctttattt 439
Query: 241 ctttatttttaatgtgtaacaattatacacaaaggccagaaaataggaagtttgacctca 300
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 440 ctttatatttaatgtgtaacaattatacacaaagaccagaaaataggaagtttgacctca 499
Query: 301 gattgaacttcatgtgtcctcattgtgaactggattgaccaatcctttagaattcacccc 360
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 gattgaacttcacgtgtcctcattgtgacctggattgaccaatcctttagaattcacccc 559
Query: 361 tgcactctgttctctaccacttctagcttacataacttgctatgtgtttttacatgtgta 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 tgcactctgttctctaccacttctagcttacataactttctatgtgtttttacatgtgta 619
Query: 421 cagcatttaacactttccattccaatagttacttatctttccttatctttcttgcctggc 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 cagcatttaacattttccattccaatagttacttatctttccttatctttcttgcctgac 679
Query: 481 atgtaaatatagatcactttataatgttttattacatttttggttt--ct---------- 528
|||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 680 atgtaaatatagatcactttataatgttttattacatttttggtttttctttctttcttt 739
Query: 529 ----ctttctttctttctttctttctttctttctttctttcttcctt------------t 572
||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 740 ctttctttctttctttctttctttctttctttctttctttcttccttccttccttccttt 799
Query: 573 ctttttttctttcttttttttttcaagacaggatttttctgtatagccctggctgtcctg 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctttttttctttcttttttttttcaagacaggatttttctgtatagccctggctgtcctg 859
Query: 633 gaactcactttgtagaccaggctggcctca 662
||||||||||||||||||||||||||||||
Sbjct: 860 gaactcactttgtagaccaggctggcctca 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space: 685252
Effective search space used: 685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_o14.g1 MSMg01no479_o14.g1 CHROMAT_FILE:
MSMg01no479_o14.g1 PHD_FILE: MSMg01no479_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:04 2005
(671 letters)
>mm_chr8_5957020_5958089
Length = 1070
Score = 1243 bits (643), Expect = 0.0
Identities = 664/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Minus
Query: 1 tttcagccactcaacattattgctattgatctaggatgcaatgctattagttttgctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tttcagccactcaacattattgctattgatctaggatgcaatgctattagttttgctttt 811
Query: 61 tgaaatagaagccatgtataaattaaaaaaaaaagatctgtcaaatgttgttcaatcttt 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 810 tgaaatagaagccatgtataaatttaaaaaaaaa-atctgtcaaatgttgttcaatcttt 752
Query: 121 cgttttaagagtgtactgcaaatttgtatcaagttgtaaatactatacctgttcattttc 180
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 751 cgttttaagagtgtactgcaaatttgtaccaagttgtaagtactatacctgttcattttc 692
Query: 181 tccattagaaataatattcttttgttttcaaaaaacaatgaatcatttaactagaaccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tccattagaaataatattcttttgttttcaaaaaacaatgaatcatttaactagaaccac 632
Query: 241 tataggtatatctaaagtagcatcacaagaaaatcgattgctgacattttagggattcaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tataggcatatctaaagtagcatcacaagaaaatcgattgctgacattttagggattcaa 572
Query: 301 catgtcagtggagagccatttgcattacaaactaatgcactcaaaaaataatgtatttag 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 571 catgtcagtggagagccatttgcattacaaactaatgcactcgaaaaataatgtatttag 512
Query: 361 tttctcaataaaaattaaagttcattcttatgttcaagtacgttattttgttaattcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttctcaataaaaattaaagttcattcttatgttcaagtacgttattttgttaattcctt 452
Query: 421 ttgttatgatacacatctcacatctctatgttgggatgaattactataacttgtaataag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttgttatgatacacatctcacatctctatgttgggatgaattactataacttgtaataag 392
Query: 481 ttttgattcattatttaaaacattgcttttaataggttcaaagattttacatgtaatact 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 391 ttttgattcattatttaaaacattacttttaataggttcaaagattttacatgtaatact 332
Query: 541 taaagatttacaaaaattacataaatttcttcaaaaggaaatttttgaaaatatacaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 taaagatttacaaaaattacataaatttcttcaaaaggaaatttttgaaaatatacaaag 272
Query: 601 gaaaaagattaatgaaaaacaattcttaaagtactcaatttggattctttttttcccatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gaaaaagattaatgaaaaacaattcttaaagtactcaatttggattctttttttcccatt 212
Query: 661 ttttattaggt 671
|||||||||||
Sbjct: 211 ttttattaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1070
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1060
Effective search space: 700660
Effective search space used: 700660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
