AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACTTTGTCTTGAGCAATTGTTTCAAGCTCCAATTTAAAATAATGGCT
ATTTGAAACAAAATGAAATGAGGACTGCTTAATCCTCCTCAAGTACTTGG
TTAATCACTTTAAGCAATGTAACTTGATCTCCATGAAAATATAAAGTAGA
TTCAGTGCTGTGTGAAGATACTACTCAGAAAGGTCATGACCCTAACCAAG
CGGTGGATGATATGATCCAGCAGTAAAGCACTTGCTTAGGATTTATGAAT
TTCTGTGTTCAATCACTGGAACTCCTTAAAAAATGATTAGGAAGAATACT
AAAAATATTAATTGATAATAAATGTTAACAGAACTTAGCTGGTACTAACA
CAGGTATACTGATGTCAGAATCAGGATTTAAATGTAGGTCTTATTTGTAC
ATTTCATCTGGTTGAGCTTTTTGAGCTCTGTGGACTGTATCTTGGGTATT
CTGTACGTCTTTATCTTTTGGCTAAAATCCACTTATCAATGAGTACATAT
CAGGCCTGTCCTTTTGGGTCTGAGTTTCCTCTCTCAGGACGACATTTTCC
TCAGCCCCACTTTGGAGAGAGAAGAAAGCAATCACAANTGTGAATGTGTG
TGTGTGTGGNGGTGCTGGGAAGGAAAAAAAAAAAGGGTTGGNTTNNNNTN
TNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTNNTTTT
GTTTTTTTTTTTTGGTGTG

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATTGCTGAGAAG
CACCTGAAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTAGAGAAAGAAGAACACTC
CTCCATTATTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTTAGAAAATTGGACATAGTACTACCGAAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGAAGCTG
GAAACAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGG
ACATTTACACAATGGAGTACAACTCAGCTATAAAAGGAATGAATTCATGA
AATTCCTAGGCAAATGGTTGGACCTGGAGGACATCATCCTGAGTGAGGTA
ACACAATCACAAAAGAATTCAAATGATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGTATACCTGAGATATAAGATACAATTTTCAAAAC
ACATGAAACTGTCGAAGACTAAGAACAAAGTGTGGACACTTTGCCCCTTC
CTAGAATT

Query= MSMg01no481_d19.b1 MSMg01no481_d19.b1 CHROMAT_FILE:
MSMg01no481_d19.b1 PHD_FILE: MSMg01no481_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:49 2005
         (582 letters)



>mm_chr8_99376447_99377427
          Length = 981

 Score =  940 bits (486), Expect = 0.0
 Identities = 555/580 (95%), Gaps = 7/580 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactttgtcttgagcaattgtttcaagctccaatttaaaataatggctatttga 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactttgtcaggagcaattgtttcaagctccaatttaaaataatggctatttga 264

                                                                       
Query: 65  aacaaaatgaaatgaggactgcttaatcctcctcaagtacttggttaatcactttaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacaaaatgaaatgaggactgcttaatcctcctcaagtacttggttaatcactttaagca 324

                                                                       
Query: 125 atgtaacttgatctccatgaaaatataaagtagattcagtgctgtgtgaagatactactc 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgtaacttaatctccatgaaaatataaagtagattcagtgctgtgtgaagatactactc 384

                                                                       
Query: 185 agaaaggtcatga-ccctaaccaagcggtggatgatatgatccagcagtaaagcacttgc 243
           ||||||||||||| |||||||||||||||||||   |||||||||||||||| |||||||
Sbjct: 385 agaaaggtcatgaaccctaaccaagcggtggat---atgatccagcagtaaatcacttgc 441

                                                                       
Query: 244 ttaggatttatgaatttctgtgttcaatcactggaactcctta-aaaaatgattaggaag 302
           ||||||||| |||||||||||||||||||||  |||||||||  ||||||||||||||||
Sbjct: 442 ttaggatttgtgaatttctgtgttcaatcaccagaactccttttaaaaatgattaggaag 501

                                                                       
Query: 303 aatactaaaaatattaattgataataaatgttaacagaacttagctggtactaacacagg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 502 aatactaaaaatattaattgataataaatgttaacagaacttagctggtactaacacagc 561

                                                                       
Query: 363 tatactgatgtcagaatcaggatttaaatgtaggtcttatttgtacatttcatctggttg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatactgatgtcagaatcaggatttaaatgtaggtcttatttgtacatttcatctggttg 621

                                                                       
Query: 423 agctttttgagctctgtggactgtatcttgggtattctgtacgtctttatcttttggcta 482
           |||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||
Sbjct: 622 agcttttttagctctgtggactgtatc--gggtattctgtatgtctttatcttttggcta 679

                                                                       
Query: 483 aaatccacttatcaatgagtacatatcaggcctgtccttttgggtctgagtttcctctct 542
           | |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 680 atatccacttattagtgagtacatatcaggcatgtccttttgggtctgagtttcctctct 739

                                                   
Query: 543 caggacgacattttcctcagccccactttggagagagaag 582
           ||||| || |||||||||||||||||||||| ||||||||
Sbjct: 740 caggatgatattttcctcagccccactttggggagagaag 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space:   555412
Effective search space used:   555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)