BAC Information

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BAC

Clone NameMSMg01-481E02
Chromosome8 (Build37)
Map Location 74,956,197 - 75,114,940
singlet/doubletdoublet
Overlap geneCalr3, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a
Upstream geneAbhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, LOC100042421
Downstream geneNwd1, Sin3b, F2rl3, Large, LOC100039001, LOC666134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481E02.T7 (MSMg01no481_e02.b1)MSMg01-481E02.TJ (MSMg01no481_e02.g1)
ACCAG561704AG561705
length739756
length of high quality
(start - end)		692 (44 - 735)637 (69 - 705)
definitionCHROMAT_FILE: MSMg01no481_e02.b1 PHD_FILE: MSMg01no481_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:50 2005CHROMAT_FILE: MSMg01no481_e02.g1 PHD_FILE: MSMg01no481_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,114,356 - 75,114,940)(74,956,197 - 74,956,833)
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATTCCCATTCCCCACATGGTGGCTCACAATCACTTCTTCAGGCAGG
CATATATATATGCAGCAGAGCATATGAGTATACATGAAATAAATAACATT
TTAAAAGAAAAAGAAAAGAAAAAATGTTTTAAAGAATTCAAAGCTAGTCT
GAGCTACTTAGCAAGATCATGCATCCAAACTAAAAGCAAGAAGAGGGTTC
GGGATGCAGGTGCAGGATGCAGGTGCGGGATGCAGGTGCGGGATGCAGGT
GTGGGATGCAGGTGTGGGACGCACCTGCTTAAAATGTGTGAGTCCCTAGG
TTCTAGTCCCAGAAATTCAAGAAAAGGAGGGGAAAAAGAGGGGCTTGAGG
GGTGTCTTGGTGATTAAGAACACACTGGCTGCTCTTGCAAAGAACCTGGG
TTTGATTCCAAGAACCTGTATGGCAGTTCTCACCTGTCTATAATTCCAAT
TCCAGGGCATCAGATGCCTTTTCCTGGCACACAGATACAAATGCAGGTAA
AAGCACCCATATAATTTTTAAATTTTATTTTAAGAAAGAAAAACAATCTT
TTTTTTTAAAAGATATCTGGATTTATTTTTATTGTCTGTGTATTTTGCCT
GCATATGCCTGTGCTTCATATGTATGCAATACCTGAAGAGGCCAGAAGAC
GGCACCAGATCCCACAGATCTGGAGTTACAAATGGTGTT

TAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGAAAGGATTAGAAGATTCAGGTGTGGCCT
TGCTGGAGGAGGTATGTCACTGTGGGTGGACTTTGAGGTTGCAAAAGTCC
AAGGCAGGCCTAGAGCCTGCCTCCCTCCCCCCTCCCCCACTCTGTCTCTG
TCTCTCTCTCTCTGCCTACAGATCAGGATGTTCCCTCCATGCTCCCTCTG
TGTTCCCTCCATGCTCCTTCCATGTCCCCTCCATGCTCCCTCCATGCTTC
GTGCTCCCTCCATGTCCCCTCTATGCTCCTTCCATGTCCCCTCCATGCTC
CTTCCATGTCCCCTCCATGCTCCTTCCATGTCCCCTCCATGCTCCTTCCA
TGTCCCCTCCATGCTTCCTCCGTGCTCCCTCCATGCTCCCTCCATGTCCC
CTCTATGCTCCCTCCATGTCCCCTCTATGCTCCCTCCATGATCCCACCAT
GCTGATAATGGGCTAAAGCTCTAGAATTGTAAGCTAGCCCCAATCAAATG
CTTTCATTTGTGAGAGTTGCCTTGGTGTCTCTTCACAACAAAAGGACAAA
GACTAAGACAACAGAGGAAATCTTGAGACAGTCTGACTTGCAGGCTATGG
TCTTTCTGTTTAGATGTGAACCACCATACCCGGTTTTCTTCACATTCATC
ATGCAAGAGGCACAAGACACATGTGGGAGGCTAAAGCAGAGGATCATGGG
GTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_e02.b1 MSMg01no481_e02.b1 CHROMAT_FILE:
MSMg01no481_e02.b1 PHD_FILE: MSMg01no481_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:50 2005
         (692 letters)



>mm_chr8_75114356_75115447
          Length = 1092

 Score = 1104 bits (571), Expect = 0.0
 Identities = 582/587 (99%), Gaps = 4/587 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaattcccattcc--ccacatggtggctcacaatcacttcttcaggcaggcatat 62
           ||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaattcaattccca--gcaaccacatggtggctcacaatcacttcttcaggcaggcatat 528

                                                                       
Query: 63  atatatgcagcagagcatatgagtatacatgaaataaataacattttaaaagaaaaagaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atatatgcagcagagcatatgagtatacatgaaataaataacattttaaaagaaaaagaa 468

                                                                       
Query: 123 aagaaaaaatgttttaaagaattcaaagctagtctgagctacttagcaagatcatgcatc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagaaaaaatgttttaaagaattcaaagctagtctgagctacttagcaagatcatgcatc 408

                                                                       
Query: 183 caaactaaaagcaagaagagggttcgggatgcaggtgcaggatgcaggtgcgggatgcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caaactaaaagcaagaagagggttcgggatgcaggtgcaggatgcaggtgcgggatgcag 348

                                                                       
Query: 243 gtgcgggatgcaggtgtgggatgcaggtgtgggacgcacctgcttaaaatgtgtgagtcc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtgcgggatgcaggtgtgggatgcaggtgtgggacgcacctgcttaaaatgtgtgagtcc 288

                                                                       
Query: 303 ctaggttctagtcccagaaattcaagaaaaggaggggaaaaagaggggcttgaggggtgt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ctaggttctagtcccagaaattcaagaaaaggaggggaaaaagaggggcttgaggggtgt 228

                                                                       
Query: 363 cttggtgattaagaacacactggctgctcttgcaaagaacctgggtttgattccaagaac 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 cttggtgattaagaacacactggctgctcttgcaaagaacctgggtttgattccaagaac 168

                                                                       
Query: 423 ctgtatggcagttctcacctgtctataattccaattccagggcatcagatgccttttcct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgtatggcagttctcacctgtctataattccaattccagggcatcagatgccttttcct 108

                                                                       
Query: 483 ggcacacagatacaaatgcaggtaaaagcacccatataatttttaaattttattttaaga 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggcacacagatacaaatgcaggtaaaagcacccatataatttttaaattttattttaaga 48

                                                          
Query: 543 aagaaaaacaatctttttttttaaaagatatctggatttatttttat 589
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  aagaaaaacaatctttttttttaaaagatatctggatttatttttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no481_e02.g1 MSMg01no481_e02.g1 CHROMAT_FILE:
MSMg01no481_e02.g1 PHD_FILE: MSMg01no481_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:50 2005
         (637 letters)



>mm_chr8_74956041_74957078
          Length = 1038

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaaggattagaagattcaggtgtggccttgctggaggaggtatgtcactgtgggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tttgaaaggattagaagattcaggtgtggccttgctggaggaggtatgtcactgtgggtg 216

                                                                       
Query: 61  gactttgaggttgcaaaagtccaaggcaggcctagagcctgcctccctcccccctccccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gactttgaggttgcaaaagtccaaggcaggcctagagcctgcctccctcccccctccccc 276

                                                                       
Query: 121 actctgtctctgtctctctctctctgcctacagatcaggatgttccctccatgctccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actctgtctctgtctctctctctctgcctacagatcaggatgttccctccatgctccctc 336

                                                                       
Query: 181 tgtgttccctccatgctccttccatgtcccctccatgctccctccatgcttcgtgctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgtgttccctccatgctccttccatgtcccctccatgctccctccatgcttcgtgctccc 396

                                                                       
Query: 241 tccatgtcccctctatgctccttccatgtcccctccatgctccttccatgtcccctccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tccatgtcccctctatgctccttccatgtcccctccatgctccttccatgtcccctccat 456

                                                                       
Query: 301 gctccttccatgtcccctccatgctccttccatgtcccctccatgcttcctccgtgctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gctccttccatgtcccctccatgctccttccatgtcccctccatgcttcctccgtgctcc 516

                                                                       
Query: 361 ctccatgctccctccatgtcccctctatgctccctccatgtcccctctatgctccctcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctccatgctccctccatgtcccctctatgctccctccatgtcccctctatgctccctcca 576

                                                                       
Query: 421 tgatcccaccatgctgataatgggctaaagctctagaattgtaagctagccccaatcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgatcccaccatgctgataatgggctaaagctctagaattgtaagctagccccaatcaaa 636

                                                                       
Query: 481 tgctttcatttgtgagagttgccttggtgtctcttcacaacaaaaggacaaagactaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgctttcatttgtgagagttgccttggtgtctcttcacaacaaaaggacaaagactaaga 696

                                                                       
Query: 541 caacagaggaaatcttgagacagtctgacttgcaggctatggtctttctgtttagatgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caacagaggaaatcttgagacagtctgacttgcaggctatggtctttctgtttagatgtg 756

                                                
Query: 601 aaccaccatacccggttttcttcacattcatcatgca 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 757 aaccaccatacccggttttcttcacattcatcatgca 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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