BAC Information

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BAC

Clone NameMSMg01-481F13
Chromosome8 (Build37)
Map Location 116,899,995 - 116,900,491
singlet/doubletsinglet
Overlap genenone
Upstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
Downstream geneClec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F13.T7 (MSMg01no481_f13.b1)MSMg01-481F13.TJ (MSMg01no481_f13.g1)
ACCAG561774AG561775
length778800
length of high quality
(start - end)		501 (42 - 542)---
definitionCHROMAT_FILE: MSMg01no481_f13.b1 PHD_FILE: MSMg01no481_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:57 2005CHROMAT_FILE: MSMg01no481_f13.g1 PHD_FILE: MSMg01no481_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACATCTTCATCTGAAGGCTGATAGCAGAATACTGACTTCCAGGCAACT
AGGATGAGGCTCTTCCTAGAGGCCCTTCCCCACAGTGACTCACCTATTCC
AACAAGGCCATACCTCCAAATAGTGCTACTCCCTGGGCTGAGCATATACA
AACCATAACACTGGCATACCCCAAGTCCAGGCAAAACCACAATGGAGGCT
CCCTTGCCCAACCCCTCATGTCAAAATATGATTGGACAATGCTATAGCCC
ATCCCGAACTGCCTCGTTTTGTGCTTTCATCCTTTAAATATGCTGTGCAA
TTTCACTTCAGGGTTGTAGTCAGCTGCTGAGTCTGTGGTCCCTGGCTGCC
TAATTCAAATGAAGATCTTGCTTTGCTGGACTCTTGTCCAGCTTAGATTA
TTTTGGTGTTTCAGACCCCAGCAGTATTTCCTATGAATACTGCTTGCATC
ATGAAAATGTCTTCAATATATGAGCCTTTTCTGGGGGGATGGGGTGAAGA
TTTAGATCTGTTTCCATTTCAGTCGAATAAAATTCAGATATCAAATCAGT
TTGCCCAAAGCATTACCCTCATTGGAGAGACTGGAAGGCTTTTGCTCTTC
CTGACTGAGCCTGCGCTGGGTTGTAATTTCAGTCCCCCACAGGGTTGTTT
GGAGATCCGGTACCTATTGAGTTATTCTAGGGGATGTTTCCCACCTCTTT
ACAGCCAGAGGTTGTTTCAACTATTGGA

ATGTTAATTCCTGATGCACGCCTGGCTTTCAACAAAAGGTGACGCTATAG
AAGGATTTCCGCAATACATGTAAAATTTCATTGATTTGGTTGTTTTGGTC
AGCTATTGAACATATCTTCCTAATACTTTTCTAAGACATTTTGTTCTGCA
TCTGGCATGTATACTAGGTAAATGAGATCCATTCTTGATGGACTCTGTGT
CTGTCCTTCCTTCATCTCTCCACCTCTCCAGCATCCTTAGTCTTATCCTT
CATGGATCTAAATAGCATCTATCTCCAAAGAGTCACGGAGCTTGAACTAA
GTATAGACATCTCATTTTTTTGTCTATTTCCACCCGTGTTCCACATGATT
CGTATCTTTTGTCTATTTCCTATCAAATTCTCTCTGCTGCACTCTTGACC
CCATGGATAAGATATTGTGAATTCCCATTCTAACACTTTCCCTGTTTAGC
TCTCCTTCTATCTTCCTATTCCTCTTGCTAACTTTGTATTACTATTTACT
GGCCTGTTTTAATACATCTCTGATGACTTCATTTTCATCCCCCTGTCTTT
CCACTCATGACCCCATCTAAGTCTTTGCTATCCACTAATCTCCCTGTCCC
TATCTTCTAGCTGATCGCTTTTTTTTATCTCCGCTGTTCCCTTCGCTCTC
ATTGCCCATTTTTTTCACCTTCTTCTCTTTCCCCGCCCTTTTTATTCGAC
CCCTCTTTTCTTTGTCCCTTTCGAATAACCCCTCTCTCCCTTTTTTCTCC
TCTCATCTCGTCTCCTTTCCCTGTTTTCCCAGTCTAACCTCCTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f13.b1 MSMg01no481_f13.b1 CHROMAT_FILE:
MSMg01no481_f13.b1 PHD_FILE: MSMg01no481_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:57 2005
         (501 letters)



>mm_chr8_116899626_116900526
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacatcttcatctgaaggctgatagcagaatactgacttccaggcaactaggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattccacatcttcatctgaaggctgatagcagaatactgacttccaggcaactaggat 807

                                                                       
Query: 65  gaggctcttcctagaggcccttccccacagtgactcacctattccaacaaggccatacct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaggctcttcctagaggcccttccccacagtgactcacctattccaacaaggccatacct 747

                                                                       
Query: 125 ccaaatagtgctactccctgggctgagcatatacaaaccataacactggcataccccaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ccaaatagtgctactccctgggctgagcatatacaaaccataacactggcataccccaag 687

                                                                       
Query: 185 tccaggcaaaaccacaatggaggctcccttgcccaacccctcatgtcaaaatatgattgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tccaggcaaaaccacaatggaggctcccttgcccaacccctcatgtcaaaatatgattgg 627

                                                                       
Query: 245 acaatgctatagcccatcccgaactgcctcgttttgtgctttcatcctttaaatatgctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 acaatgctatagcccatcccgaactgcctcgttttgtgctttcatcctttaaatatgctg 567

                                                                       
Query: 305 tgcaatttcacttcagggttgtagtcagctgctgagtctgtggtccctggctgcctaatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgcaatttcacttcagggttgtagtcagctgctgagtctgtggtccctggctgcctaatt 507

                                                                       
Query: 365 caaatgaagatcttgctttgctggactcttgtccagcttagattattttggtgtttcaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caaatgaagatcttgctttgctggactcttgtccagcttagattattttggtgtttcaga 447

                                                                       
Query: 425 ccccagcagtatttcctatgaatactgcttgcatcatgaaaatgtcttcaatatatgagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ccccagcagtatttcctatgaatactgcttgcatcatgaaaatgtcttcaatatatgagc 387

                            
Query: 485 cttttctggggggatgg 501
           |||||||||||||||||
Sbjct: 386 cttttctggggggatgg 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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