TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTATTTTTCCCAAGACTTTTATCATGAATGGGTGATGGATTTTGACAAA
TGCTTGCTCAGCATCTAATGAAATGATCATGTGTGTGCGTTTTTATTTTT
CCTTTGAGTTTATGTAGAGGGTTATGTTGATAGATTTCCATATATTGAAC
CATCCCTGCATCCCTGGGATGAAGCCTACTTGATCGTGGTGAATGATCAT
TTTTGTGTGTGCATGTGTGTTCTTGGATTCAGTTTGCAAGAATTTTATTA
TTGAGTATTTTTGCATCCATATTCATAAGGGAAATTGTTTTGAAGTTCTC
TTTCTTTGTTGGGTCTTTGTGTGGTTTGGGTATCAGAGTTATTGTGGCTT
CATAGAATGAATTGGGTAGTGTTCCTTCTCTTTCTGTTTGGGCTACTTTG
AAGGTTTGATAGAACTCTGCACTAAACACATCCTGTCCTGGACTTTTTTG
GTTGGAAGTCTATTAATGACTGCTTCTATTTCTTTACAGGTTCTGGGAAT
GTTTATATAGTTCATCTGATTTTGAATTAATTCTTGTACCTCAAATCTGT
CTAGAAATTGTCATTTTAATTCAAATTTTCCAGTTTTGTTTAGGCTTTGC
AGGAGGATCTGATGATTTTTTTTTGGATTTCATCAGTTTCTGTTGTTATG
CTTCCATTTTCATTTCTGATTTTGTTGATTTGGATATTGTCTCTATGCCC
ACTGTTTAGT

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAACCAATTGATCATTGTTTTCTCACTCG
GTCTTTTACTGAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGA
AAACTGAACATGTATTTTTTCTCTTACAAATTTCATGGCAATTTTAATTA
TTATATTTTTTAATTATTACAATTATATTATTTATTTTTAATTATTGAGT
TAATATGTGTTCTCCATTAAGTTTCAAAATTTTATTTATGCAAAAGAGAA
ATTAACTATAAGTGAAACTAACGATGATTTACAAGTGAATGAGAAGATCC
ACCGTTACAACTTTTCTATAGATTGACTTAATACTTGAAGGAAAATAACC
TTCATTAGCGGATACATATAGGTATTTAGCACATTCGATGTTTCAAACTT
TGAGGATTGATTAAACATAAAAAAGCATAGTTAGGCCGGGCATGGTGGCG
CATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAG
TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTAC
ACAGAGAAACCTTGTCTCGAATAAACAAAACAAAACAAAACAAAACAAAC
AAACAAAAAAAAAACCAAAAAAAAAGCATAGTTTAACTAAGATTTTACAA
TAGTAATAGTTTGGTATCTGAATCAATTTTTGAGCATATGTACAGTGCCT
GTTGAAAC

Query= MSMg01no481_h16.g1 MSMg01no481_h16.g1 CHROMAT_FILE:
MSMg01no481_h16.g1 PHD_FILE: MSMg01no481_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:08 2005
         (673 letters)



>mm_chr8_53429318_53430390
          Length = 1073

 Score = 1160 bits (600), Expect = 0.0
 Identities = 657/688 (95%), Gaps = 24/688 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaccaattgatcattgttttctcactcggtcttttactgaatt---t-tgtgtgtgtgt 56
           ||||||||||||||||||||||||||||||||||| ||||||||   | |||||||||||
Sbjct: 803 caaccaattgatcattgttttctcactcggtctttaactgaattgtgtgtgtgtgtgtgt 744

                                                                       
Query: 57  gtgtgtgtgtgtgtgtg----------tactgaaaactgaacatgta-ttttttctctta 105
           |||||||||||||||||          |||||||||||||||||||| ||||||||||||
Sbjct: 743 gtgtgtgtgtgtgtgtgtatgtgtgtatactgaaaactgaacatgtatttttttctctta 684

                                                                       
Query: 106 caaatttcatggcaattttaattattatattttttaattattacaattatattatttatt 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaatttcatggcaattttaattattatattttttaattattacaattatattatttatt 624

                                                                       
Query: 166 tttaattattgagttaatatgtgttctccattaagtttcaaaattttatttatgcaaaag 225
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 tttaattattgagttaataggtgttctccattaagtttcaaatttttatttatgcaaaag 564

                                                                       
Query: 226 agaaattaactataagtgaaactaacgatgatttacaagtgaatgagaagatccaccgtt 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agaaattaactataagtgaaactaacgatgatttacaagtgaatgagaagatccaccgtt 504

                                                                       
Query: 286 acaacttttctatagattgacttaatacttgaaggaaaataaccttcattagcggataca 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acaacttttctatagattgacttaatacttgaaggaaaataaccttcattagcggataca 444

                                                                       
Query: 346 tataggtatttagcacattcgatgtttcaaactttgaggattgattaaacataaaaaagc 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tataggtatttagcacattcgatgtttcaaactttgaggattgattaaacataaaaaagc 384

                                                                       
Query: 406 atagttaggccgggcatggtggcgcatgcctttaatcccagcactcgggaggcagaggca 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atagttaggccgggcatggtggcgcatgcctttaatcccagcactcgggaggcagaggca 324

                                                                       
Query: 466 ggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 525
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggcggatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccaggg 264

                                                                       
Query: 526 ctacacagagaaaccttgtctcgaataaacaaaacaaaacaaaacaaaacaaacaaacaa 585
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 263 ctacacagagaaaccttctctcgaataaacaaaacaaaacaaaacaaaacaaaaaaacaa 204

                                                                       
Query: 586 aaaaaaaaccaaaaaaaaagcatagtttaactaagattttacaatagtaatagtttggta 645
           | |||    |||||     |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 acaaa----caaaa-----gcatagtttaactaagattttacaatagtaatagtttggta 153

                                       
Query: 646 tctgaatcaatttttgagcatatgtaca 673
           ||||||||||||||||||||||||||||
Sbjct: 152 tctgaatcaatttttgagcatatgtaca 125


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)