Query= MSMg01no481_k17.b1 MSMg01no481_k17.b1 CHROMAT_FILE:
MSMg01no481_k17.b1 PHD_FILE: MSMg01no481_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:22 2005
(239 letters)
>mm_chr8_89848384_89849027
Length = 644
Score = 437 bits (226), Expect = e-127
Identities = 238/244 (97%), Gaps = 5/244 (2%)
Strand = Plus / Minus
Query: 1 tgatgtgtatgtgtaggcagaggccctgaggaccttgaatggcctacagtgtctctgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgatgtgtatgtgtaggcagaggccctgaggaccttgaatggcctacagtgtctctgcca 385
Query: 61 acctgacctcctaggagctgctgtcttgaggttctgctttggtcattaggaagctgcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctgacctcctaggagctgctgtcttgaggttctgctttggtcattaggaagctgcttc 325
Query: 121 catctgggaaatttgctttctctgtaaaagaaaaaagtattgtaggttctgggctaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catctgggaaatttgctttctctgtaaaagaaaaaagtattgtaggttctgggctaccat 265
Query: 181 taactagag----ttttttttttttaaa-taaaggctcagttatttctttccctctttct 235
||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 taactggaggtttttttttttttttaaaataaaggctcagttatttctttccctctttct 205
Query: 236 ttca 239
||||
Sbjct: 204 ttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 644
Length adjustment: 9
Effective length of query: 230
Effective length of database: 635
Effective search space: 146050
Effective search space used: 146050
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no481_k17.g1 MSMg01no481_k17.g1 CHROMAT_FILE:
MSMg01no481_k17.g1 PHD_FILE: MSMg01no481_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:23 2005
(669 letters)
>mm_chr8_89689041_89690109
Length = 1069
Score = 996 bits (515), Expect = 0.0
Identities = 585/617 (94%), Gaps = 18/617 (2%)
Strand = Plus / Plus
Query: 1 aatttttttgagattttgcttatttctctccatgtgtgcatatttcacttacatgtgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aatttttttgagattttgcttatttctctccatgtgtgcatatttcacttacatgtgtgc 258
Query: 61 ctatgtatcacttgtgggcagtgcctctggggaagaaggtgtcagagcttctggaactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctatgtatcacttgtgggcagtgcctctggggaagaaggtgtcagagcttctggaactgg 318
Query: 121 agttcagatggttgcaagcctccatgcagttgctgggaaccaaacttgg-ccctctggtt 179
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 319 agttcagatggttgcaagcctccatgcagttgctgggaaccaaacttgggccctctggaa 378
Query: 180 gagggaccagtgctcttaactgctgagccatctcctcagctccatgttttgaggcttctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagggaccagtgctcttaactgctgagccatctcctcagctccatgttttgaggcttctc 438
Query: 240 atctttctta-----tttctgtgggattctactattagtttacctttacattgtttttga 294
||||||| | | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 atctttc--aagaaat--ctgtgggattctactattagtttacctttacattgttcttga 494
Query: 295 acaactttcacattatagctaaagctaactgcaaaggagggtccccttgcctcggcttcc 354
||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 495 acaactttcacattatagcgaaagctaacggtaaaggagtgtccccttgcctcggcttcc 554
Query: 355 caggtacctgggctacaggtgttgctccccttcttaggctctttctgtgcttttggattt 414
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 555 caggtacctgggctacaggtgttgttccccttcttaggctctttctgtgcttttggattt 614
Query: 415 atttaccacagtttccagtaatgttttcttatttactttctgtaggatctatggtaggat 474
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atttatcacaatttccagtaatgttttcttatttactttctgtaggatctatggtaggat 674
Query: 475 ctcttttggcatgtttgattggtgggattcatatacattctctatgtctctccctctgca 534
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 675 ctcttttggcatgtttgattggtgggattcatatacattctctctgtctctccctctgca 734
Query: 535 tctctgtctctttgtctctgtctctctgtctctgtctctctgtttctccctccccatctc 594
||||||||||||||||||||||||| |||||||||| |||||||| |||||||
Sbjct: 735 tctctgtctctttgtctctgtctct--------gtctctctgtctctccctctccatctc 786
Query: 595 tgtctctctgtctctct 611
||||||| |||||||||
Sbjct: 787 tgtctctttgtctctct 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
