BAC Information

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BAC

Clone NameMSMg01-481P03
Chromosome8 (Build37)
Map Location 63,030,517 - 63,031,147
singlet/doubletsinglet
Overlap genenone
Upstream geneAadat
Downstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481P03.T7 (MSMg01no481_p03.b1)MSMg01-481P03.TJ (MSMg01no481_p03.g1)
ACCAG562232AG562233
length771760
length of high quality
(start - end)
609 (37 - 645)646 (71 - 716)
definitionCHROMAT_FILE: MSMg01no481_p03.b1 PHD_FILE: MSMg01no481_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:44 2005CHROMAT_FILE: MSMg01no481_p03.g1 PHD_FILE: MSMg01no481_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGGGGCGCTATACGACGCACTATAGTCCGAGGATCCGCGGAATTCTTA
CCTGATTTTCACCGAATGGATGAGAAGCACCTGAAAAAATGTTCAGCATC
CTTAATCATTAGGAAAATGCAAATCAAAACAACCCTGAGATTCCATCTCA
CACTAGTCAGAATGGTTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CAAGGATGTGGAGAAAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGC
TTTTACAACCACTCTAGAGATCAGTCTGGCAGTTCCTCAGAAAATTAGAC
ATAGTACTACCGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGA
AGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCTCTCAACA
GAGAAATGGATACAGAAATTGTGGTACATTTACACAATGAAGTACTACTC
AGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATTGGCC
TGGAGGGCATCATCCTGAGTGAGGTAACTCAATCACAGAAGAACCCACAT
GATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCC
AAGATACAAGATACCAAGCACATGAAACTCAAGAAGAACGAAGACCACAG
TGTGGATACTTTGCCCCCTTCTTAGAAATGGGAAAAAAACACCCATGGAA
GGAGTTACAGAGAGAAAGTTT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTAAAAATGAACTTGCCAGGCCTCTAACT
TGGGAAGATAGCCATAATCTAAACTAAACTAAACTGGCCTTACAAACCGC
TATCAACCTGAGGAATTTCAAATTACTAAACCTTCTATCTTGTTTGTTTA
TGAGGGTGAAATATGCGAATGTAGAACATGTGGAAGGAACAGCCTGGGAT
TAGACTGAGTTGCTCAGGCATGTCCTTAATGTTTCAAAAGCATATACACA
GTAGTAGTAGCTGATTTTAGGAAACCAATTTTACTTGCAGATCTCATATG
GTATGGAAAGTACTAAATTCCAGTCAAACAGCAGTTTTCACCAATAGAAA
ATAATAGAAACATATGCTATTCTTTATCATTCTAATGTCTATCCACAATG
TTATAGCTTAACCATATTGTTCTACTACCCCTACCCAAAGATGGTGAGCA
TTGTGATTAGGAACAGTAGCAGTTCATGTTGGTTTGTGTGATGGTCTGTA
GGATGGTTCTGAGTAATGGATAATGTAGATTGTCAACTTGGCAGGAGTTA
GAATGACCTAGGATATCTGCCTAGAGCCCATCAGAAAGTCCTAGGCTATT
CCTGTATCTTGAAATGTTTTGATCATGTTTTCCTCTAGCAATTTCAGGGT
TTTGCTCTTACATTAAGGTTCTTGATCCATATTGACTTTTGTGCAGAGTG
CGAGATATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_p03.g1 MSMg01no481_p03.g1 CHROMAT_FILE:
MSMg01no481_p03.g1 PHD_FILE: MSMg01no481_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:44 2005
         (646 letters)



>mm_chr8_63030456_63031501
          Length = 1046

 Score = 1056 bits (546), Expect = 0.0
 Identities = 614/646 (95%), Gaps = 15/646 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaaaaatgaacttgccaggcctctaacttgggaagatagccataatctaaactaaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 692 actaaaaatgaacttgccaggcctctaacttgggaagatagccataatctaaactaaatt 633

                                                                       
Query: 61  aaactggccttacaaaccgctatcaacctgaggaatttcaaattactaaaccttctatct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 632 aaactggccttacaaaccgctatcaacctgaggaatttcaaattactaaaacttctatct 573

                                                                       
Query: 121 tgtttgtttatgagggtgaaatatgcgaatgtagaacatgtggaaggaacagcctgggat 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgtttgtttacgagggtgaaatatgcgaatgtagaacatgtggaaggaacagcctgggat 513

                                                                       
Query: 181 tagactgagttgctcaggcatgtccttaatgtttcaaaagcatatacacagtagtagtag 240
           ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| ||
Sbjct: 512 tagactgagttgctcaggcatgtccttaatggttcaaaagcatacatacagtagtagcag 453

                                                                       
Query: 241 ctgattttaggaaaccaattttacttgcagatctcatatggtatggaaagtactaaattc 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 452 ctgattttaggaaaccaattttacttgcagatctcatatggtgtggaaagtactaaattc 393

                                                                       
Query: 301 cagtcaaacagcagttttcaccaatagaaaataatagaaacatatgctattctttatcat 360
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 392 cagtcaagcagcagttttcaccaatagaaaataatagaaacatatgccattctttatcat 333

                                                                       
Query: 361 tctaatgtctatccacaatgttatagcttaaccatattgttctactacccctacccaaag 420
           ||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 332 tctaatgtctatctacaatgtcatagcttaaccatattgttctactacccatacccaaag 273

                                                                       
Query: 421 atggtgagcattgtgattaggaacagtagcagttcatgttggtttgtgtgatggtctgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atggtgagcattgtgattaggaacagtagcagttcatgttggtttgtgtgatggtctgta 213

                                                                       
Query: 481 ggatggttctgagtaatggataatgtagattgtcaacttggcaggagttagaatgaccta 540
           ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||
Sbjct: 212 ggatggttctgagtaatggttaatgttgattgtcaacttggcaggatttagaatgaccta 153

                                                                       
Query: 541 ggatatctgcctagagcccatcagaaagtcctaggctattcctgtatcttgaaatgtttt 600
           |||||||               ||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggatatc---------------agaaagtcctaggctattcctgtatcttgaaatgtttt 108

                                                         
Query: 601 gatcatgttttcctctagcaatttcagggttttgctcttacattaa 646
           |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 107 gatcatgttttcctgtagcaatttcagggttttgctcttacattaa 62


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)