BAC Information

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BAC

Clone NameMSMg01-483N11
Chromosome8 (Build37)
Map Location 34,988,224 - 34,988,664
singlet/doubletsinglet
Overlap geneRbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-483N11.T7 (MSMg01no483_n11.b1)MSMg01-483N11.TJ (MSMg01no483_n11.g1)
ACCAG563672AG563673
length782783
length of high quality
(start - end)		593 (74 - 666)585 (81 - 665)
definitionCHROMAT_FILE: MSMg01no483_n11.b1 PHD_FILE: MSMg01no483_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:11 2005CHROMAT_FILE: MSMg01no483_n11.g1 PHD_FILE: MSMg01no483_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCCGCTCTGTACCCCATTTTTAATGGGGTTATTTGA
TTTTCTGAAGCCCATCTTCTTGAGTTCTTTACATATATTGGATATTAGTC
CCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCTAATCTGTTGGTGGC
CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTT
TATGAGGTCCCGTTTGTCAATTCTCAATCTTATAGAACAAGCCATTGCTG
TTCTGTTCAGGAATTTTTCTTCTGTGCCCATATCTTTGAGGCTTTTCCCC
ACTTTCTCCTTTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTT
GATCCACTTACGCCCGACCTTAGTACAAGGAAATAGGAATGGGTCAATTC
ACATTCTTCTACATGATAGCCACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGTCTTTTTTCCACTGGATGGTTTTAACTCTCTTGTCAAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTGTATTCCATT
GATCTACCTGTCTGTCGCTGTACCAGTACCATGCAGNTTTTTTGGTTTTG
TTTTTTTTTAAAGATTTATTTATTTATTATTATATGTTAGTACACTGTAG
CTGTCTTCAGACACACCACAAGAGGGAGTCAGATCTTGTTACAAATGTTT
GTGAGCCCAAATGTGGTTGCCTGGGATTGAAN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATGTTTGTACAGAGATG
GTTGTACCAGGTGTTATCATTACAGAGAAGACATCCAGCTTGTAATGAAC
AGAACATGCTAGCTGTCACGGGGAGGAACAGCAGAGTCAGTAGGTGTAAG
GTAAGTGTCTTCTCTGGCATTTTACATAGATAAGATAGACATGACCAAGA
TAGACATGACCATTATGGTTCTAGTATGGTCTCTCTCAACTCCCTACAGG
GAACTTCAAGAATTCTGTCAAAGCTGGGTGTGGTGGCGCACACCTTTGAT
CCCTGTGCCAAGGCAGGCGGGTGGTTCTCTGTGACTTTGAGGCTAGCTTG
GTCTAGCCACTATCTTGCTTTTGGCTTCCCAAAAAGGCAAACGGTTGTGA
TAGGGAGCCCTTGACAGAGCATGACTGTTCCCAGGCTAGCCAGGACTGCA
CAGTGAGATCCTGTCTCAACAAACAAAACAAGCAACAGAAATGTTAGTGC
ATGGATACAGCCTTCATTTCTTGTGTTGTCACTTTAGACTTCTGCAAGGA
TGCCTGGATGGGAAAGGCTTAGTGATTCTCCAGCCTCTGATGCCAACCAA
CTCTCTCTCTCTAGNTCCTTGTGTTTGTATTGAAGGGCTTTTAGGGCAGC
CATCTCTACCATATGTCATATGATACCATGCGTGCTATACATCAGAAAGT
AATGTGGAAAGTGGCCCTTGTTATTTTGTGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no483_n11.g1 MSMg01no483_n11.g1 CHROMAT_FILE:
MSMg01no483_n11.g1 PHD_FILE: MSMg01no483_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:12 2005
         (585 letters)



>mm_chr8_34988224_34989208
          Length = 985

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatgtttgtacagagatggttgtaccaggtgttatcattacagagaagacatccagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcatgtttgtacagagatggttgtaccaggtgttatcattacagagaagacatccagct 382

                                                                       
Query: 61  tgtaatgaacagaacatgctagctgtcacggggaggaacagcagagtcagtaggtgtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaatgaacagaacatgctagctgtcacggggaggaacagcagagtcagtaggtgtaag 322

                                                                       
Query: 121 gtaagtgtcttctctggcattttacatagataagatagacatgaccaagatagacatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaagtgtcttctctggcattttacatagataagatagacatgaccaagatagacatgac 262

                                                                       
Query: 181 cattatggttctagtatggtctctctcaactccctacagggaacttcaagaattctgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatggttctagtatggtctctctcaactccctacagggaacttcaagaattctgtca 202

                                                                       
Query: 241 aagctgggtgtggtggcgcacacctttgatccctgtgccaaggcaggcgggtggttctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagctgggtgtggtggcgcacacctttgatccctgtgccaaggcaggcgggtggttctct 142

                                                                       
Query: 301 gtgactttgaggctagcttggtctagccactatcttgcttttggcttcccaaaaaggcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtgactttgaggctagcttggtctagccactatcttgcttttggcttcccaaaaaggcaa 82

                                                                       
Query: 361 acggttgtgatagggagcccttgacagagcatgactgttcccaggctagccaggactgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  acggttgtgatagggagcccttgacagagcatgactgttcccaggctagccaggactgca 22

                                
Query: 421 cagtgagatcctgtctcaaca 441
           |||||||||||||||||||||
Sbjct: 21  cagtgagatcctgtctcaaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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