Query= MSMg01no484_a23.b1 MSMg01no484_a23.b1 CHROMAT_FILE:
MSMg01no484_a23.b1 PHD_FILE: MSMg01no484_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:29 2005
(691 letters)
>mm_chr8_55199198_55200291
Length = 1094
Score = 1164 bits (602), Expect = 0.0
Identities = 662/686 (96%), Gaps = 12/686 (1%)
Strand = Plus / Minus
Query: 5 gaattcatttcc-cttaaactgtgatggcttgcacactgtaaatacatgcacctagtctg 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gaattcatttccacataaactgtgatggcttgcacactgtaaatacatgcacctagtctg 619
Query: 64 atttacaactacttaaaacagaattatacagcttagtttctatcttttggatatttgact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atttacaactacttaaaacagaattatacagcttagtttctatcttttggatatttgact 559
Query: 124 ttagggatgatttctgcagctatcattgtctaagagataaatgagaatgcatgcactgct 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 558 ttagggatgatttctgcagctatcattgtctaagagataaatgagattgcatgcactgct 499
Query: 184 ctgtcatctgcaatgtattttcatatgaattatgcaaattaatac-acaaacttcgacaa 242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 498 ctgtcatctgcaatgtattttcatatgaattatgcaaattaatacaacaaacttctacaa 439
Query: 243 gaaacattgctatcatcatgttcctgatggtgaacttaaaactaagaaaaatgtaaaact 302
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gaaacattgctatcataatgttcctgatggtgaacttaaaactaagaaaaatgtaaaact 379
Query: 303 atctgagatataatggagagtaactaggaagaattccaacccactgtttcttacttacat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atctgagatataatggagagtaactaggaagaattccaacccactgtttcttacttacat 319
Query: 363 tccaagtccctgcatgtaacatagtatttatcactacaggaatatatacagaaaattgaa 422
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 318 tccaaatccctgcatgtaacatagtatttatcactacaggaatatatatagaaaattgaa 259
Query: 423 gtcttgcaataatttaaaaaattcagttctttatactatttt-cacttgaggacagaagc 481
||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 258 gtcttgcaataattttaaaaattcagttctttatactatttttcacttgaggac------ 205
Query: 482 atttatatctctatgtttgattgggaaatataccatttcccttt-gttactagaataaat 540
||||||| ||| ||||||||||||||||||||||||||| | | ||||||||||| | |
Sbjct: 204 -tttatatttctgtgtttgattgggaaatataccatttcc-tgtcgttactagaatgagt 147
Query: 541 tgcacagagagagttgtttaaaacatcacagatatgttacaatgtagaggtaagtgaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgcacagagagagttgtttaaaacatcacagatatgttacaatgtagaggtaagtgaaaa 87
Query: 601 ctgattctgttgggaccactgtatcaatgggactaaggagccacagaaggaccccatgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 ctgattctgttgggaccactgtatcaatgggactaaggagccacagaaggaccccatgca 27
Query: 661 ttgccttcccagtgtcctgtccacac 686
||||||||||||||||||||||||||
Sbjct: 26 ttgccttcccagtgtcctgtccacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1094
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1084
Effective search space: 738204
Effective search space used: 738204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_a23.g1 MSMg01no484_a23.g1 CHROMAT_FILE:
MSMg01no484_a23.g1 PHD_FILE: MSMg01no484_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:29 2005
(583 letters)
>mm_chr8_55030154_55031136
Length = 983
Score = 1089 bits (563), Expect = 0.0
Identities = 578/583 (99%)
Strand = Plus / Plus
Query: 1 caagaaactactggaagtgaaatagctcaagcaattcctatgaaaaaagagttggtaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaaactactggaagtgaaatagctcaagcaattcctatgaaaaaagagttggtaaaa 260
Query: 61 gaaaatgtaaaaggtaagatgagaggaaattttctgaaaaaatcagtggtctaaaaaagt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatgtaaaaggtaagatgagaggaaaatttctgaaaaaatcagtggtctaaaaaagt 320
Query: 121 tttccatcaacttcaatcaagattcaaaggcttgctttatctccacgctatttgtaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccatcaacttcaatcaagattcaaaggcttgctttatctccacgctatttgtaggag 380
Query: 181 aaaagaaatgggaatctgatgctttggcgaaacagtaatgggcacccagcacctttacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagaaatgggaatctgatgctttggcgaaacagtaatgggcacccagcacctttacca 440
Query: 241 tgaattgttttgtctactgatatgagcaggaagttgtccttgactgttagaactgatgtc 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaattgttttgtctactgatataagcaggaagttgtccttgactgttagaactgatgtc 500
Query: 301 tatttgagttaagacttgaacacaatgtccctacacacaaaagtctaagtgcagaaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatttgagttaagacttgaacacaatgtccctacacacaaaagtctaagtgcagaaacaa 560
Query: 361 ttgggctgttctttgaagcagtttaactccctgaaagctaatctgtgtagaccctttctg 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ttgggctgttctttgaagcagtttaactccctgaaagctaatatgtgtagaccctttctg 620
Query: 421 aaatatcagctgctttggatactcttaattcattataaagtgaatctggtctacccaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatatcagctgctttggatactcttaattcattataaagtgaatctggtctacccaaac 680
Query: 481 cttcatttccacatgaaatccgtttctaacatggtgcccacaaaaagcaagatttgcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 cttcatttccacatgaaatccgtttctaacatggtgcccacaaaaagcaggatttgcaaa 740
Query: 541 caaaataggctggaaacctttagaaactttgcttcttttactt 583
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 caaaataggctggaaacctttataaactttgcttcttttactt 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
