NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATTATTCTCTGTTGTGGTTCATGGCTGCTTGATAATT
TAATAATCCAGAAAGAAAATTACCTTAGCAGGGGAGGAGAAGATTCTAGA
GAAGAAGCCAAAGCAATCTCTTTTATTTATGTTAATTTTCAAAATTCTTT
TAAAATCATTTGTCTTATAGGTGAACCATGAATGTCTGATTAAACAAAAT
CATTTAAATAAAATAAGTCAAATAAACTCATTTGAAGGTGTCAGGCCTCA
GGGTGCATTTGCCCAACCAGATTCTTTGCCACTGCAAACTCCAGGACTCT
TATTAAATGCCATCCCTGAAATCAGGATGCAGTTTGTAATCTAAGTGAAA
CCACCAAGGACCACAGATCCTCCCCTGACCTGCTTGGGGCTGAACTCCAT
GCTCCGTTAGGCAGCTAAGCAGAGCAGAGTGAGGACACATCTCACCCCGG
ATACACACATTTCCAATGATCACCACTTTGGTTCACCCTTAACAGGATGC
TTGCAGGGATGTGACAGAGGAGCCACTTTTAGTCATCTGACTCTATAAAC
ACCTTCTCCATAGGTGAAACAAGCTATTAGACCCTTTGTTAATGAGCCAT
TATCATTTACTTCCTGTTTTACATTTCATCACATTTGCTCACTTCAAGTC
ACAGGAGCATTTGAATTTGGAAAGAAATAGAGATGGAGAAAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGACCTACAGATACACTACAGAGC
AATAGAAACAAAAATAATACTGTTTTGTCACAAAACAGACATGTAAATCA
ATGGGAAAAAGATCAAAGATCCAAGCACAAACACATGTGACTTCACCCAC
TTAATATTTGCCAACAAAGCCCTCAACACATGACAGTAAATAAAAGGAAG
CTCCTTTAACAAATAATGCTAGGAAAACTGGATATTTACATGCAGAAATA
TGAACTCAGACCCATGTCTATCATCTTAAATAAAAACTAACTCCAAATGG
ATCAAATATGTAACCTTGAAACCTCAAACCTTGAAACTGTTATAAGAAAC
CACAGGCAGTGCCATACATGATTAAAGTGCATGAAGGAATTCCTAAATAG
GACTTTATTAGCCAAGAATTAAAGTCAACAATTAGCTAGTAGGATTTTGT
GAAACGATAATATTTCCACACAGTTAAAGAAAGAAACAATTGGATGTAGA
GAAAAGTTACAAGATGGGAGAGAAGCCTGGGAGCTGTACATCTCACTGAA
GAGTAATATACAAAACCATATAAATAACTCAACAGAGTCAATAAACCAAA
TGGCCCATTCCAATAAAATGGACTTAAGACCTGAAAAGAGTGCTCTCAAT
AAAGGGAAAAAATGGCTAAGAAGTAGCTCAAAAAACAATGTTCATT

Query= MSMg01no484_f05.b1 MSMg01no484_f05.b1 CHROMAT_FILE:
MSMg01no484_f05.b1 PHD_FILE: MSMg01no484_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:51 2005
         (686 letters)



>mm_chr8_78904558_78905643
          Length = 1086

 Score = 1247 bits (645), Expect = 0.0
 Identities = 672/681 (98%), Gaps = 4/681 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattattctctgttgtggttcatggctgcttga-taatttaataatccagaaag 63
           ||||||||||| | ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 205 gaattccattagtgtctgttgtggttcatggctgctt-actaatttaataatccagaaag 263

                                                                       
Query: 64  aaaattaccttagcaggggaggagaagattctagagaagaagccaaagcaatctctttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaattaccttagcaggggaggagaagattctagagaagaagccaaagcaatctctttta 323

                                                                       
Query: 124 tttatgttaattttcaaaattcttttaaaatcatttgtcttataggtgaaccatgaatgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttatgttaattttcaaaattcttttaaaatcatttgtcttataggtgaaccatgaatgt 383

                                                                       
Query: 184 ctgattaaacaaaatcatttaaataaaataagtcaaataaactcatttgaaggtgtcagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctgattaaacaaaatcatttaaataaaataagtcaaataaactcatttgaaggtgtcagg 443

                                                                       
Query: 244 cctcagggtgcatttgcccaaccagattctttgccactgcaaactccaggactcttatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcagggtgcatttgcccaaccagattctttgccactgcaaactccaggactcttatta 503

                                                                       
Query: 304 aatgccatccctgaaatcaggatgcagtttgtaatctaagtgaaaccaccaaggaccaca 363
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 aatgccatctctgaaatcaggatgcagtttgtaatctaagtgaaaccaccaaggaccata 563

                                                                       
Query: 364 gatcctcccctgacctgcttggggctgaactccatgctccgttaggcagctaagcagagc 423
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatcctcccctgacctgcttggg-ctgaactccatgctccgttaggcagctaagcagagc 622

                                                                       
Query: 424 agagtgaggacacatctcaccccggatacacacatttccaatgatcaccactttggttca 483
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 agagtgaggacacatctcaccccagatacacacatttccaatgatcaccactttggttca 682

                                                                       
Query: 484 cccttaacaggatgcttgcagggatgtgacagaggagccacttttagtcatctgactcta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cccttaacaggatgcttgcagggatgtgacagaggagccacttttagtcatctgactcta 742

                                                                       
Query: 544 taaacaccttctccataggtgaaacaagctattagaccctttgttaatgagccattatca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taaacaccttctccataggtgaaacaagctattagaccctttgttaatgagccattatca 802

                                                                       
Query: 604 tttacttcctgttttacatttcatcacatttgctcacttcaagtcacaggagcatttgaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttacttcctgttttacatttcatcacatttgctcacttcaagtcacaggagcatttgaa 862

                                
Query: 664 tttggaaagaaa-tagagatg 683
           |||||||||||| ||||||||
Sbjct: 863 tttggaaagaaaatagagatg 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)