BAC Information

Click to search

BAC

Clone NameMSMg01-484H05
Chromosome8 (Build37)
Map Location 11,698,840 - 11,699,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710
Downstream geneLOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484H05.T7 (MSMg01no484_h05.b1)MSMg01-484H05.TJ (MSMg01no484_h05.g1)
ACCAG564135AG564136
length765674
length of high quality
(start - end)		574 (76 - 649)616 (59 - 674)
definitionCHROMAT_FILE: MSMg01no484_h05.b1 PHD_FILE: MSMg01no484_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:01 2005CHROMAT_FILE: MSMg01no484_h05.g1 PHD_FILE: MSMg01no484_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAT
CCGCGGAATTCCAGAATTCCCAGTTACAGCTACACAGTGAGACCCTTTTA
AACACACACACACACACACACACACACATTCATCTCATGAAAACTTGCAG
CCTTCAAAATGTTGGTCTCTAATGTTGTGCGAGTCTCTAACCCACAGTCC
AAGGGCTTTATGCAGCCAGGAACAGTCATCAATGTCATCCAACCAAAAAA
ATTATAAATTTAGTTAAAACAACATGAGATTTTTGTTGCAGTTTCCTTTT
TGATAACTCAATTGTTCGGTTTGTTTCATGAACTTTGTAGACAACAATAT
TGTTGTGTCTCAGTGTCAAAAGATTAGATACCCATGTTAATCAAAATATT
GAGGGGGCAAGTAGGGGTTCATTGTAAGACTGCAGCCAAACCAGAGAAGC
TCTAATAGAGAATAAAACATGCTATTGAGCCTAGCACTGCAGGAGACACG
GGCCTATGGGCAGGCACCCATCCTATGTGCCGATTTCCTTTCCACAGCTT
TTTAAATCCTCCCAAACTGTTCTCCTAAAAGCTCACAGTGGTGTCCACAT
TCCCTGGTGGGGATATGTAACTGTCAAGATCAGTGCCACGTGATGGGGAG
AGGAAGGACCACGTGTTAATAGTGTTGAGGTGATGATGACCTGAGAGTGC
CTTTCCCCACCCCCTCGTGGCTTACCGGATTCTCCTTTTCCGTTCCTGGT
GTTCACGCCTTGCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTTTGTAGACCAGGCTTGGCCTCAAACTCAGAAATTCGTCT
GCTTCTGCCTCACGAGTGCTGGGATTAAAGGCGTGGGCCACCATGCCCAG
CCTAAATGCATAGCTTTAATAAGCACTAAATAAGCATGGCCCTGACACAG
AGAGAAATGCATGCATGAATGCATGCATGTTATAATAATCACTTGCCTAA
AAGAGCAAGCAGATTCAAAGGGACCTTATTCAACAAAAAAACCACTGTAC
GTGTTGAAAGCAGCACACAGACATAACTTTATGACGGGCTGTTTATCATA
CCAAGTGCTCCTGGGTCAGCTGGGGTTGGCTGGAAAAAATAACTCACTGC
CTTGTAAAACTGGTAAAAGATTTCTATAACATCCTCTACGCGATTCAATA
AGTGCAGAGCAAAGTTCTTTGGTGGACATACAAGACACAGTTATCCTACT
CAGATCAGGGAGCATAGATAGACGCACGATAGACAGACTAGCCAGAAACC
ACCAACTAGGGACAGATGGAGGTCACAGGGACAGTAGTAGAGAATTCAAG
CATGGGCCTTTCTCAGTCAAATGAACCCAAGGGGAAACGCCCCTTGTGAG
TTTTCTTTCCTTACTGTAACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_h05.b1 MSMg01no484_h05.b1 CHROMAT_FILE:
MSMg01no484_h05.b1 PHD_FILE: MSMg01no484_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:01 2005
         (574 letters)



>mm_chr8_11698327_11699300
          Length = 974

 Score =  760 bits (393), Expect = 0.0
 Identities = 444/461 (96%)
 Strand = Plus / Minus

                                                                       
Query: 108 gtctctaacccacagtccaagggctttatgcagccaggaacagtcatcaatgtcatccaa 167
           ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||
Sbjct: 974 gtctctaacccacagtccatgggctttatgcatccaggaacagtcatcactgtcatccaa 915

                                                                       
Query: 168 ccaaaaaaattataaatttagttaaaacaacatgagatttttgttgcagtttcctttttg 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ccaaaaaaattataaatttagttaaaacaacatgagatttttgttgcagtttcctttttg 855

                                                                       
Query: 228 ataactcaattgttcggtttgtttcatgaactttgtagacaacaatattgttgtgtctca 287
           ||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 854 ataactcaattgttcagtttggggcatgaactttgtagacaacaatattgttgtgtctca 795

                                                                       
Query: 288 gtgtcaaaagattagatacccatgttaatcaaaatattgagggggcaagtaggggttcat 347
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 794 gtgtcaaaagattggatacccatgtaaatcaaaatattgagggggcaagtaggggttcat 735

                                                                       
Query: 348 tgtaagactgcagccaaaccagagaagctctaatagagaataaaacatgctattgagcct 407
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| 
Sbjct: 734 tgtaagactgcagccaaaccagagaagctctaaccgagaataaaacatgctattgagccc 675

                                                                       
Query: 408 agcactgcaggagacacgggcctatgggcaggcacccatcctatgtgccgatttcctttc 467
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 674 agcactgcaggagacacgggcctatgggcaggcacccatcctatgtgctgatttcctttc 615

                                                                       
Query: 468 cacagctttttaaatcctcccaaactgttctcctaaaagctcacagtggtgtccacattc 527
           ||  |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 614 catggctttttaaatccttccaaactgttctcccaaaagctcacagtggtgtccacattc 555

                                                    
Query: 528 cctggtggggatatgtaactgtcaagatcagtgccacgtga 568
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cctggtggggatatgtaactgtcaagatcagtgccacgtga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |