Query= MSMg01no484_k21.b1 MSMg01no484_k21.b1 CHROMAT_FILE:
MSMg01no484_k21.b1 PHD_FILE: MSMg01no484_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
(655 letters)
>mm_chr8_58094711_58095762
Length = 1052
Score = 207 bits (107), Expect = 2e-57
Identities = 156/175 (89%), Gaps = 7/175 (4%)
Strand = Plus / Plus
Query: 219 tcacctatgaagccatggaagtctttgaaaaagttaatgagggccttcatgatgctttcc 278
|||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 419 tcacctttgaagccatggaagtcttggccaaagttaatgagggccttcatgatgctttcc 478
Query: 279 ttcattgatttaacacatatttagaagtatggggacttgtcatcccaacacaggatctcc 338
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct: 479 ttcattgatttaacacatatttagaagtatggggccttgtcctcccaacacaggacctcc 538
Query: 339 ctactagagttctcctccag--ctgcctgacaaaatactgtattgaatttacttg 391
||||| ||||||||| || | ||||||| |||||| |||||||| |||||
Sbjct: 539 ctactggagttctcc---agagc--cctgacataatactacattgaattcacttg 588
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1052
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1042
Effective search space: 672090
Effective search space used: 672090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_k21.g1 MSMg01no484_k21.g1 CHROMAT_FILE:
MSMg01no484_k21.g1 PHD_FILE: MSMg01no484_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:20 2005
(684 letters)
>mm_chr8_58065043_58066129
Length = 1087
Score = 1197 bits (619), Expect = 0.0
Identities = 670/688 (97%), Gaps = 5/688 (0%)
Strand = Plus / Minus
Query: 1 atgaaaacaggtggatgaagttttgcatggaataaattttaactcgtttggacttgatca 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 887 atgaaaacaggtggatgaagttttgcatggaataaatttcaactagtttggacttgatca 828
Query: 61 tctcatacccagcaattttaagatgtctcaatttagactgggaaaaataacaactatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tctcatacccagcaattttaagatgtctcaatttagactgggaaaaataacaactatcca 768
Query: 121 aatag-tttttatttaaagtagctatttggagctttaaaagttagaatttcctaactata 179
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 767 aatagttttttttttaaagtagctatttggagctttaaaagttagaatttcataactata 708
Query: 180 acag-ttgtgtttcaagcatgttgattattttattatgctcctgatactggaatttaagt 238
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 acagtttg-gtttcaagcatgttgattattttattatgctcctgatactggaatttaagt 649
Query: 239 tttgaaaggcacagacaaaatagaaattctaacttcagtccctgatgctttcaaaactaa 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttgaaaggcacagacaagatagaaattctaacttcagtccctgatgctttcaaaactaa 589
Query: 299 tgctagtttttcttctctgagttgtttggtttggtggtcttcaagaggatgagatcaaaa 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tgctagtttttcttccctgagttgtttggtttggtggtcttcaagaggatgagatcaaaa 529
Query: 359 tgagggctataatttgtttctgtgtttcccatccttgttacagaatctcagtttgttttt 418
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgaggtctataatttgtttctgtgtttcccatccttgttacagaatctcagtttgttttt 469
Query: 419 tcagataatagtgcctaaatatctctcaaaattatcctttttcttttaagtcacagcatt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tcagataatagtgcctaaatatctctcaaaattatcctttttcttttaagtcacagcatt 409
Query: 479 gaactttcttttaaactactgaaataacctttggactagtttgcctacatctgatgcttt 538
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 408 gaactttcttctaaactactgaaataacctttggactagtttgcctacttctgatgcttt 349
Query: 539 acccattcaactaatcctaaacat--aatcctatagtctcttaaaacacttaacttgtca 596
|| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 348 actcattcaactaatcctaaacatttaatcctatagtctcttagaacacttaacttgtca 289
Query: 597 ccatgactaanatgtttagttctccatgatcaataccacatttttatcaaccatctatgc 656
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 288 ccatgactaaaatgtttagttctccatgatcaacaccacatttttatcaaccatctatgc 229
Query: 657 taatattttctgcttatacttttatccc 684
||||||||||||||||||||||||||||
Sbjct: 228 taatattttctgcttatacttttatccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1087
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1077
Effective search space: 725898
Effective search space used: 725898
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
