BAC Information

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BAC

Clone NameMSMg01-485C17
Chromosome8 (Build37)
Map Location 60,799,224 - 60,799,606
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485C17.T7 (MSMg01no485_c17.b1)MSMg01-485C17.TJ (MSMg01no485_c17.g1)
ACCAG564678AG564679
length742782
length of high quality
(start - end)		624 (54 - 677)386 (81 - 466)
definitionCHROMAT_FILE: MSMg01no485_c17.b1 PHD_FILE: MSMg01no485_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:01 2005CHROMAT_FILE: MSMg01no485_c17.g1 PHD_FILE: MSMg01no485_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTTGCTCTGAGCCCCATTTTTTAATGGGGTTA
TTTTATTTTCTGGAGTCCAACTTCTTGAGTTCTTTATATATATTGGATAT
TAGTTCCCTATCTGATTTAGGATAGGTAAAGATACTTTCCCAATGGTCTT
TTTATCTTATTGACGGTCTCTTTTGCCTTACAGAAGCTTTGAAGTTTTAT
GAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TATTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGGTTTTCCCTACT
TTCTCCTCTACAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCTTAATC
CACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCACAT
TCTTCTACATGATAATCACCAGTTGTGCCAGCACCATTTCTTGAAAATGC
TGTCTTTTTTCCACTTGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGA
CCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCGCTATACCAGTACCATGCAGTTTTTATCACAATTGCTC
TGTAGTACAGCTTTAGGTCAGGAATGGTGATTCCATCACAGGTTTTTTTT
ATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATT

NNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAGAGAGAGTGGACACT
TTTGTCTTGTCCCTGATTTAAGTGAAATTGTTCTTTGTTTCTCTCCATTT
AATTTGATGCTGGATATAGGCATACCATAGATCATATTTATTGTATTTAG
GTATATCCCTTATGTCCCTAATCTCTTCTGGCCTCACCACCCAGCTGTTC
GTTTATTAAATAATTAAAAGTACACCTTAAACCATTCTTTTCCTCTAGTT
GTCATGTCATCATGAGCTCCTTCACTTACTGAAACCTCAAATGTGATAAT
TGCATTAATGCTTGTCATCTATCCTGACCTCCTTTCTTCCCCCTCATTTA
GTTTTGAATAAACAACCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGN
NTGTGTGGTGTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_c17.g1 MSMg01no485_c17.g1 CHROMAT_FILE:
MSMg01no485_c17.g1 PHD_FILE: MSMg01no485_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:01 2005
         (386 letters)



>mm_chr8_60798913_60799698
          Length = 786

 Score =  725 bits (375), Expect = 0.0
 Identities = 382/385 (99%), Gaps = 3/385 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatagagagagtggacacttttgtcttgtccctgatttaagtgaaattgttctttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 atatagagagagtggacacttttgtcttgtccctgatttaagtgaaattgttctttgttt 635

                                                                       
Query: 61  ctctccatttaatttgatgctggatataggcataccatagatcatatttattgtatttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ctctccatttaatttgatgctggatataggcataccatagatcatatttattgtatttag 575

                                                                       
Query: 121 gtatatcccttatgtccctaatctcttctggcctcaccacccagctgttcgtttattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gtatatcccttatgtccctaatctcttctggcctcaccacccagctgttcgtttattaaa 515

                                                                       
Query: 181 taattaaaagtacaccttaaaccattcttttcctctagttgtcatgtcatcatgagctcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taattaaaagtacaccttaaaccattcttttcctctagttgtcatgtcatcatgagctcc 455

                                                                       
Query: 241 ttcacttactgaaacctcaaatgtgataattgcattaatgcttgtcatctatcctgacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttcacttactgaaacctcaaatgtgataattgcattaatgcttgtcatctatcctgacct 395

                                                                       
Query: 301 cctttcttccccctcatttagttttgaataaacaaccaaagtgtgtgtgtgtgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cctttcttccccctcatttagttttgaataaacaaccaaagtgtgtgtgtgtgtgtgtgt 335

                                    
Query: 361 gtgtgtgtgnntgtgtg-gtgtgtg 384
           |||||||||  |||||| |||||||
Sbjct: 334 gtgtgtgtg--tgtgtgtgtgtgtg 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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