BAC Information

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BAC

Clone NameMSMg01-485I06
Chromosome8 (Build37)
Map Location 11,743,034 - 11,743,527
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373
Downstream geneArhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485I06.T7 (MSMg01no485_i06.b1)MSMg01-485I06.TJ (MSMg01no485_i06.g1)
ACCAG564941AG564942
length730737
length of high quality
(start - end)
518 (77 - 594)494 (84 - 577)
definitionCHROMAT_FILE: MSMg01no485_i06.b1 PHD_FILE: MSMg01no485_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:29 2005CHROMAT_FILE: MSMg01no485_i06.g1 PHD_FILE: MSMg01no485_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGATCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATC
CGCGGAATTCAAGGTCAATTTGCCCGGCAAGTTCCAGGACAGCCAAACTT
AGGCAGTGAAGGAGTTGGAAAACAGAAAGCTGGTGATGATGTAATAGAAC
AGGGTGGGCATGTTCCAGTTCCAGCACGTAGCAGAACTTGGCAGCTTTGG
CCATGTGGCTCTGGCTTTAGAAGGGACTACCGGGCAACTGATGCTGGTTA
GCTAGAGCTAAGAAATTAGCAGTGATTAAGAAGAGACCAGGATCACTTAG
GTGAAATCTGGGAAGTGTTTTCTTAGAGCACAAAGAAACTGTGTTCCAGA
GATAGCCAAGGTTGTACCGCCTGCTGCGGTAATGTGTACGAATCACCCAG
GTGATACTGGTGTTGAATGTCTGAAGGGGTCATGGAGAGCAGCTAAGGTT
CTGCACTGTGAGAGGCCATGGAAGGCCACTGGTGAAAGTGTAGCCTCATT
TGCAATTGATGGCCCAGGACTGAAGGGGTCATGCAAAGAAGCTGAGAGTT
GGCACCACAAAGAGAGCCTATGAGAGGACATTGGTGAAACCTAGTTGCAG
CAGAAGACCCCAGTGTATTGGAGATGCCAATACCATGGGATGATCACCAA
GAACAGCAGCAGCAGTGGAGAGGAGTCTACCAGAGCCTATAGTTTTACAG
AGGGCAGAGCTGGAAATGTGACCCAGGTCN
TGAGGCGATGAGAGGGGTGGGCTGGGGGGCCGCCTGGCCTTTCACAAAAA
GGGGACCTATAGAAGGAGTTTCAGAAAAAAGAGATCACAGGCTTGGGCCA
GGCCTGAGAGCCCGCATGCTTACTCAGGTCAGAGAGAAAGCGGATGCTCT
GATGCTCAGGGGCCCTCAGTTGGGAGCTCTGAGCAGCCTACTGAACAAAT
CACACAGAACCAGGACTATGTGATGGACTCCTGCCTAGGTGGCCAGTCTG
CATGCTCACCCTGGAGGGTCTCCTCAGGCCTGGTAGTTCCTCCCTAAGTC
TTTTCTGCTTAGACAGTGGTGTCTTTTTGTCTGCTTGGGTTGATTTATGT
ATGCAGTATTGGAATTCAGAGGCAGGAAGAAGGTAAAGAAATCCTGTTTG
GGTTGGATAGGGGTTTTGAACTTGTCTAAAAAGAGAGGTCCCTATATGTG
TCTGTACATCTAAAAACTTCCTTTGGAATGGGAGGTGTACTTGTGCTAAG
ATACCACACTCAGGATGCTGGTCCAGGGTCTATGATGTGGGCTACCTCAG
CTTGTAGAACCAAGGGACCAAGACAAGGGCTTCTAGACGTTCCCCCAAAG
GAGCAGCAGGATCTGTGTAGACAGATTCTCTCCTAGGGAGGCTTTGTTGG
GAGCGTAAACAAACTCCGAAGTGTGGCGGGAAGTTTGTCCACTGACCCCC
CGTTTGACATGTTTTTTCTCTTGGGATGCACAGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_i06.g1 MSMg01no485_i06.g1 CHROMAT_FILE:
MSMg01no485_i06.g1 PHD_FILE: MSMg01no485_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:29 2005
         (494 letters)



>mm_chr8_11742834_11743727
          Length = 894

 Score =  893 bits (462), Expect = 0.0
 Identities = 486/498 (97%), Gaps = 8/498 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacaggcttgggccaggcctgagagcccgcatgcttactcaggtcagagagaaagcgg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 atcacaggcttgggccaggcctgagagcccgcatgcttacccaggtcagagagaaagcgg 260

                                                                       
Query: 61  atgctctgatgctcaggggccctcagttgggagctctgagcagcctactgaacaaatcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctctgatgctcaggggccctcagttgggagctctgagcagcctactgaacaaatcac 320

                                                                       
Query: 121 acagaaccaggactatgtgatggactcctgcctaggtggccagtctgcatgctcaccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaccaggactatgtgatggactcctgcctaggtggccagtctgcatgctcaccctg 380

                                                                       
Query: 181 gagggtctcctcaggcctggtagttcctccctaagtcttttctgcttagacagtggtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggtctcctcaggcctggtagttcctccctaagtcttttctgcttagacagtggtgtc 440

                                                                       
Query: 241 ----tttttgtctgcttgggttgatttatgtatgcagtattggaattcagaggcaggaag 296
               |    ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ccagt----gtctgcttgggttgatttatgtatgcagtattggaattcggaggcaggaag 496

                                                                       
Query: 297 aaggtaaagaaatcctgtttgggttggataggggttttgaacttgtctaaaaagagaggt 356
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 aaggtaaagaaatcctgtttgggttggataggggttttgaacttgtctaagaagagaggt 556

                                                                       
Query: 357 ccctatatgtgtctgtacatctaaaaacttcctttggaatgggaggtgtacttgtgctaa 416
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 557 ccctatatgtgtctgtacatctaaaatcttcctttggaatgggaggtgtacttgtgctaa 616

                                                                       
Query: 417 gataccacactcaggatgctggtccagggtctatgatgtgggctacctcagcttgtagaa 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gataccacactcaggatgctggtccagggtctatgatgtgggctacctcagcttgtagaa 676

                             
Query: 477 ccaagggaccaagacaag 494
           ||||||||||||||||||
Sbjct: 677 ccaagggaccaagacaag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)