Query= MSMg01no485_m01.b1 MSMg01no485_m01.b1 CHROMAT_FILE:
MSMg01no485_m01.b1 PHD_FILE: MSMg01no485_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:49 2005
(658 letters)
>mm_chr8_18790955_18792013
Length = 1059
Score = 1205 bits (623), Expect = 0.0
Identities = 647/655 (98%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 5 gaattccacagggtgccattctgtacccactcatgtcctatgtgagcagcacacaatagc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 gaattccacagggtgacattctgtacccactcatgtcctatgtgagcagcacacaatagc 800
Query: 65 caggaaggcaggatgcacggtgctaactcagactggaggcgctgagaaatcctcctaagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 caggaaggcaggatgcacggtgctaactcagactggaggcgctgagaaatcctcctaagg 740
Query: 125 atcgttcagtttctctgaggtgcttctcagcagcctttcaggaaactcattggctgtaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcgttcagtttctctgaggtgcttctcagcagcctttcaggaaactcattggctgtaag 680
Query: 185 actagacattaagctatggactaaccaaatgcaccactcagccttggatgtcaacttgca 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actagacattaagctatggaccaaccaaatgcaccactcagccttggatgtcaacttgca 620
Query: 245 aacttgaaagtggatttaaaaagatgcttttaacatttttaaatatttaatccaaactgc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aacttgaaagtggatttaaaaagatgcttttaacatttttaaatatttaatccaaactgc 560
Query: 305 tcttaagactcttcctggcccaaactcatactgcctattccagttggagtaaatttaatt 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttaagactctccctggcccaaactcatactgcctattccagttggagtaaatttaatt 500
Query: 365 gataaatactgaatattgccttttatagcttattacaaaataattcccctcacaaatcca 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 499 gataaatactgaatattgcctttcatagcttattacaaaataattcccctcacaaatcca 440
Query: 425 tgccttaaaagtttctgttaatcttagtatttttttctattttttaaaaaaattcattca 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgccttaaaagtttttgttaatcttagtatttttttctattttttaaaaaaattcattca 380
Query: 485 -ttttttagaataggtttgaggtttcttcatacatgcttagacaagtgcactacctgaag 543
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 379 tttttttagaataggtttgaggtttcttcatacatgcttagataagtgcactacccgaag 320
Query: 544 cttctcttagtatgttctgagcatgcggcatctcctttctttcttttccctcctcctttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cttctcttagtatgttctgagcatgcggcatctcctttctttcttttccctcctcctttc 260
Query: 604 cctctgtagaatgatctaggatcctgcattggtaggcaaacattccattacttag 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctctgtagaatgatctaggatcctgcattggtaggcaaacattccattacttag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_m01.g1 MSMg01no485_m01.g1 CHROMAT_FILE:
MSMg01no485_m01.g1 PHD_FILE: MSMg01no485_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:49 2005
(501 letters)
>mm_chr8_18646626_18647526
Length = 901
Score = 969 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Plus
Query: 1 caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaatttggctgtgcctttagatagtctgatagaagctttgatctcaaacttcacttt 260
Query: 61 cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgagtttaaacagcagtgattcacccaaatgacagttgatatttgtttttcttcttgaaa 320
Query: 121 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaacatgagtatttgttattcgtcgagttggggaattgtcacacttcctctaagatg 380
Query: 181 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacactttataaaatgtccccgtaaacagtttcctgttgtttattcctgctgggtgtgc 440
Query: 241 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagatagggtggaccccgtcaccggacagatggggtagcagacactgagcttggattta 500
Query: 301 taacccagttgtctgctgatctgcagttactttgataaagccttcctggaaatccaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacccagttgtctgctgatctgcagttactttgataaagccttcctggaaatccaaagc 560
Query: 361 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggactggcagaggtgggctgtgctcagtggtggtgtgggactcaacagcacatgcggc 620
Query: 421 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgaagccatttagaaaccagcagcagtatattgatgcccacagtggctgtccactc 680
Query: 481 ccacgagcatgctcgttttgt 501
|||||||||||||||||||||
Sbjct: 681 ccacgagcatgctcgttttgt 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
