NNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAAGTTCTGCATCATCGTGGAGGAGCAAGTGAACTAAT
TTCTGTGTCAGTTATTCCATTTGCTCCCGGGAGCAATCGTTCTTTCCAGA
TTCAAGTCCTGTTGACTCCTTTCCAAACCTCAAGCAATTCTTGCCAAGCC
ATTTTGGAGAGGCGGTTCTTGGAGAACACACAACCATATGGAATGGAACT
CATGCTCCATGCCAGCCCACACTGCAGAATTTGCATAATGTAAACCATGG
TCCACCCTATTGTAAGAAGGGCTTTGGAAAATATTCATTTCTAGGGACTC
CATGCTAAGGTCTAGCAAATTTTCTATACAAACAGCCTCAAAGAATGGCT
TGCTAATGAATTGCATCAGTATTCACTAATATTAAGTTCAAAAGGATGAA
AGTATGAAGCAGTAGTACAGTGTCGCACCTAAGCCCACTCCTACTGGACA
TTGTTCATTTCTTGAGGTTCATTCCTTGTGTGTTGCTTGGTCATCATTAT
CATCCTCAGCTGACTACAGTGCCTATCAATAAGTATATGCTGAAGAAACG
TATTGTTGCCCTATTCCCAACAGTTCATTCCATGTTCCTTCAAACTGAGA
AAAGAACCCCATAGACNAAGATACAAAGAGATGGTGTGTTTTGGGGGTAT
AAATCAAAAAAGTTATTTTCAACAGATAGCTGCTA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACCAACAGA
GTCAACTAACCTCAACCCTTGGGGACCTCTCAAAGGCTGATTAACCAACC
AAAGAGCATACATGAGCTAGACTTACTCCCCAAATCCCCACACATATGTG
GGTTATGAAAAATGGGACTAGAGCTATCTCTCAAGCTGTTGCTTGTCAGT
GGCTCTATTATCTGGCCTCAGAGGGAGAAGTGCCTAGCCCTGTAGAGACT
TGATGTGCCAGGGTGGAGAATACCTAGGGAGAACTTATGTTCTCTTGGAG
GAGAAGAGGAGAGGGAATGGGGAACTGNNGGGGGGGGGGGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Query= MSMg01no485_n14.b1 MSMg01no485_n14.b1 CHROMAT_FILE:
MSMg01no485_n14.b1 PHD_FILE: MSMg01no485_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:57 2005
         (684 letters)



>mm_chr8_7468716_7469799
          Length = 1084

 Score = 1278 bits (661), Expect = 0.0
 Identities = 675/680 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaagttctgcatcatcgtggaggagcaagtgaactaatttctgtgtcagttat 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 884 gaattcccaagttctgcatcatcgtggaggagcaagtgaactgatttctgtgtcagttat 825

                                                                       
Query: 65  tccatttgctcccgggagcaatcgttctttccagattcaagtcctgttgactcctttcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tccatttgctcccgggagcaatcgttctttccagattcaagtcctgttgactcctttcca 765

                                                                       
Query: 125 aacctcaagcaattcttgccaagccattttggagaggcggttcttggagaacacacaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 aacctcaagcaattcttgccaagccattttggagaggcggttcttggagaacacacaacc 705

                                                                       
Query: 185 atatggaatggaactcatgctccatgccagcccacactgcagaatttgcataatgtaaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 704 atatggaatggaactcatgctccatgccagcccacactgcagaatttgcataatgcaaac 645

                                                                       
Query: 245 catggtccaccctattgtaagaagggctttggaaaatattcatttctagggactccatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 catggtccaccctattgtaagaagggctttggaaaatattcatttctagggactccatgc 585

                                                                       
Query: 305 taaggtctagcaaattttctatacaaacagcctcaaagaatggcttgctaatgaattgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 584 taaggtctagcaaattttctatacaaacagcctcaaagaatggcttggtaatgaattgca 525

                                                                       
Query: 365 tcagtattcactaatattaagttcaaaaggatgaaagtatgaagcagtagtacagtgtcg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcagtattcactaatattaagttcaaaaggatgaaagtatgaagcagtagtacagtgtcg 465

                                                                       
Query: 425 cacctaagcccactcctactggacattgttcatttcttgaggttcattccttgtgtgttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cacctaagcccactcctactggacattgttcatttcttgaggttcattccttgtgtgttg 405

                                                                       
Query: 485 cttggtcatcattatcatcctcagctgactacagtgcctatcaataagtatatgctgaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cttggtcatcattatcatcctcagctgactacagtgcctatcaataagtatatgctgaag 345

                                                                       
Query: 545 aaacgtattgttgccctattcccaacagttcattccatgttccttcaaactgagaaaaga 604
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 344 aaacgtattgttgccctattcccaacagttcattccatgttccttcaaactgagaaaaaa 285

                                                                       
Query: 605 accccatagacnaagatacaaagagatggtgtgttttgggggtataaatcaaaaaagtta 664
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 accccatagacaaagatacaaagagatggtgtgttttgggggtataaatcaaaaaagtta 225

                               
Query: 665 ttttcaacagatagctgcta 684
           ||||||||||||||||||||
Sbjct: 224 ttttcaacagatagctgcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)