BAC Information

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BAC

Clone NameMSMg01-486M10
Chromosome8 (Build37)
Map Location 119,733,643 - 119,734,214
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
Downstream gene4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486M10.T7 (MSMg01no486_m10.b1)MSMg01-486M10.TJ (MSMg01no486_m10.g1)
ACCAG565900AG565901
length733750
length of high quality
(start - end)
572 (79 - 650)119 (198 - 316)
definitionCHROMAT_FILE: MSMg01no486_m10.b1 PHD_FILE: MSMg01no486_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:10 2005CHROMAT_FILE: MSMg01no486_m10.g1 PHD_FILE: MSMg01no486_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGG
CGGAATTCAGTGTTCTGTCCTGTAAAGAAGCCTGGAAGCAAGTAGTGAGC
AGCCTGAGGCGTTGGGTCCTCAGGGCGTGTTTCCCATCCTCCCCCCCACA
CACACACTTTTTTTTATACTAGGCACTTTAAACCTGGAGGAGCGGTAATT
CTTCTGGGGCTACTGCAAGGTGATTACTTGAAACTCAACTTGAACTTGAG
ACATTTAAAAGGCTGTGTTTTCCTGTAGCAGAAAAGCGGCATATGCACAC
AGAATAGAGGGCTTAGTTTCTGTCCTTGTCAGGATCAGAGACGAGAGCGC
GTGTCTGATCTGACACAGTTGGCAACTTAGGCGCCTGAGGCTGCCTGCTG
TTAAGGTTCTCCAGAGGTGCTGTTGTTTCTTGGGAGTTTTTCCTTTTACT
GGCTCCTCCCTCCGCTCTCTCCCCTTCAGTCCTGGTAGACCAGATGTCAG
AATGAAGCAGATGTGTTCCAGGTTCAAGGCCGAGGTTGACCCTGAGACCT
TGAATCATGTTCTGCTTAAAATCATGACTGGTGTGACTTGTCTCTCACAC
AGGGGACTCTCCTTCACTTAATCCCTGCATATCGGTTCTCCACACCACCA
GTAACAGAGCCTCAGTGCCCCTGCCTCTGGTCTCCCCTGGTCCCCAAGTC
AGGGTAAAGTTGCTGAAAGACCTCTGCCATTGG
TTCATTATAGTGGGGAGGCCGGGAGGACGCCTGCTCAAAAAAAGGTAGGG
GACCNANAGAAGTAACTAAAAAATTCTATGCCTGGAATTATTTGGGGTTA
TGTACTATTTATCAGGTCACCATCTCTGTCTCCCCATCCTAACCTAAGTG
AAGATGGAGTCCATGAGCTGGTCTCTTGCTAAGTGCAATGGAGAATGTGA
GCTTAGGATGAATTCCCATCACTCTCTGCTTCCTGATGGGAGGATAAAAA
AATACTAACTGCCCCATGCTCCAGCCAACATGACTTCACTACTGGGGCCT
GCTGGTCATGGCAACTACCTTATTTGATGATGCCCCCAGTTCCAGCTGGG
TCGGTGACTCCATTATTAGCTTTGCCCACACAGTCTGGTTATCTCCACCC
CCTACAGACAGGATCTGAGGCCTAGGGAATAATGAAGCAGCCTACCATGG
CTCACACTTAACCACAGAAAGAAAGTATCTACTGAAATATATGACTAAGG
ATTACGAGTACCAATACTACAGTCCTGCGCCAGAAGGCAGACTTCTGGAA
ATTCAAATAAATACTATCCGATAGTCTCACCTCTTTGGATGTCTTTTTAC
TTCTGACATGTCTAGCCATAAAAAGGTGCGCTATGAATGTTTCTGCAGTT
GCATCTGGACTCTATGGCAAAGAACGTTTATTTGATTATTGATGTCTGTT
TCTGTAAACAATATTGGGATAACATTCCAGGCACTCACCTGTACTCTCTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_m10.b1 MSMg01no486_m10.b1 CHROMAT_FILE:
MSMg01no486_m10.b1 PHD_FILE: MSMg01no486_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:10 2005
         (572 letters)



>mm_chr8_119733443_119734414
          Length = 972

 Score = 1106 bits (572), Expect = 0.0
 Identities = 572/572 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctggaagcaagtagtgagcagcctgaggcgttgggtcctcagggcgtgtttcccatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctggaagcaagtagtgagcagcctgaggcgttgggtcctcagggcgtgtttcccatc 260

                                                                       
Query: 61  ctcccccccacacacacacttttttttatactaggcactttaaacctggaggagcggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccccccacacacacacttttttttatactaggcactttaaacctggaggagcggtaa 320

                                                                       
Query: 121 ttcttctggggctactgcaaggtgattacttgaaactcaacttgaacttgagacatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttctggggctactgcaaggtgattacttgaaactcaacttgaacttgagacatttaa 380

                                                                       
Query: 181 aaggctgtgttttcctgtagcagaaaagcggcatatgcacacagaatagagggcttagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggctgtgttttcctgtagcagaaaagcggcatatgcacacagaatagagggcttagtt 440

                                                                       
Query: 241 tctgtccttgtcaggatcagagacgagagcgcgtgtctgatctgacacagttggcaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgtccttgtcaggatcagagacgagagcgcgtgtctgatctgacacagttggcaactt 500

                                                                       
Query: 301 aggcgcctgaggctgcctgctgttaaggttctccagaggtgctgttgtttcttgggagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcgcctgaggctgcctgctgttaaggttctccagaggtgctgttgtttcttgggagtt 560

                                                                       
Query: 361 tttccttttactggctcctccctccgctctctccccttcagtcctggtagaccagatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttccttttactggctcctccctccgctctctccccttcagtcctggtagaccagatgtc 620

                                                                       
Query: 421 agaatgaagcagatgtgttccaggttcaaggccgaggttgaccctgagaccttgaatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaatgaagcagatgtgttccaggttcaaggccgaggttgaccctgagaccttgaatcat 680

                                                                       
Query: 481 gttctgcttaaaatcatgactggtgtgacttgtctctcacacaggggactctccttcact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gttctgcttaaaatcatgactggtgtgacttgtctctcacacaggggactctccttcact 740

                                           
Query: 541 taatccctgcatatcggttctccacaccacca 572
           ||||||||||||||||||||||||||||||||
Sbjct: 741 taatccctgcatatcggttctccacaccacca 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)