Query= MSMg01no486_m19.b1 MSMg01no486_m19.b1 CHROMAT_FILE:
MSMg01no486_m19.b1 PHD_FILE: MSMg01no486_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:12 2005
(618 letters)
>mm_chr8_94328321_94329336
Length = 1016
Score = 1168 bits (604), Expect = 0.0
Identities = 611/614 (99%), Gaps = 3/614 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcccggtgtctacgccaggccatgcatctgcaagtccgtgtggctgctaatag 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gaattcctcccggtg-ctacgccaggccatgcatctgcaagtccgtgtggctgctaatag 871
Query: 65 cggagagagagaatgagaaagccagagagggggagagagagaaaaggaaaaaaatattct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cggagagagagaatgagaaagccagagagggggagagagagaaaaggaaaaaaatattct 811
Query: 125 cagctcaatttaagtctcatggaaagggcttacaactgtaattaaatcattaaattcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 cagctcaatttaagtctcatggaaagggcttacaactgtaattaaatcattaaattcttg 751
Query: 185 tctacgcttcacagagcggagagaaattaacttcccaccaacctcattttctatttgaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tctacgcttcacagagcggagagaaattaacttcccaccaacctcattttctatttgaac 691
Query: 245 atgaaataatgattttctgcccgtctaattacaaagccaacatctgatcaagccagcatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atgaaataatgattttctgcccgtctaattacaaagccaacatctgatcaagccagcatc 631
Query: 305 cagaggggattatcgcatgcgcgagtattagacctcattaccagcttgagtgcaaaatta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 cagaggggattatcgcatgcgcgagtattagacctcattaccagcttgagtgcaaaatta 571
Query: 365 ttacatcttgtaattggatggtgagatttatatacagatcggcccggtttctgtaagatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttacatcttgtaattggatggtgagatttatatacagatcggcccggtttctgtaagatt 511
Query: 425 gtaattacaagcttcgttggttagctacttatcagaactttgcaggaaaacaaaacaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtaattacaagcttcgttggttagctacttatcagaactttgcaggaaaacaaaacaaat 451
Query: 485 gactgaggaaaacgagcgtttcattaacctgtaaccccagctggggggggggggggagcg 544
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 450 gactgaggaaaacgagcgtttcattaacctgtaaccccagct--ggggggggggggagcg 393
Query: 545 tacgcagcagcctctgcaagaagctgaaggatagccagcccgcaccgcctctgggggact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tacgcagcagcctctgcaagaagctgaaggatagccagcccgcaccgcctctgggggact 333
Query: 605 ctgagccttgggag 618
||||||||||||||
Sbjct: 332 ctgagccttgggag 319
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1016
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1006
Effective search space: 611648
Effective search space used: 611648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_m19.g1 MSMg01no486_m19.g1 CHROMAT_FILE:
MSMg01no486_m19.g1 PHD_FILE: MSMg01no486_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:12 2005
(694 letters)
>mm_chr8_94309776_94310869
Length = 1094
Score = 1332 bits (689), Expect = 0.0
Identities = 694/697 (99%), Gaps = 3/697 (0%)
Strand = Plus / Plus
Query: 1 gctatctacctttctgtatgacaattgtccgtttacatatcatttttggagaaatgtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gctatctacctttctgtatgacaattgtccgtttacatatcatttttggagaaatgtctg 257
Query: 61 ctaagagtattttcctgattttaaataggattgattgttttactgttcacttacagtgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctaagagtattttcctgattttaaataggattgattgttttactgttcacttacagtgtc 317
Query: 121 tttatatattgtagacatggcccctagatatatcatttgcaggcatttcatcgtatacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tttatatattgtagacatggcccctagatatatcatttgcaggcatttcatcgtatacaa 377
Query: 181 gtctttatgttttgaactatttctctcattcttttgatgtcttaaagaagactttgcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtctttatgttttgaactatttctctcattcttttgatgtcttaaagaagactttgcttg 437
Query: 241 actcaaatttaaaaagagttttctctatggatttttgaagtgttagttcttctacttaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 actcaaatttaaaaagagttttctctatggatttttgaagtgttagttcttctacttaag 497
Query: 301 tttaggatgtttagttggttgtgtgaatggtgtgaaggggtccaacttaattctcataaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttaggatgtttagttggttgtgtgaatggtgtgaaggggtccaacttaattctcataaa 557
Query: 361 tgtggacatcgctgcctgtttttaaaatgaagtctcattagccgggcggtggtggtgcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgtggacatcgctgcctgtttttaaaatgaagtctcattagccgggcggtggtggtgcac 617
Query: 421 gcctttaatcccagcactagggaggcagaggcaggtggatttctgagtttgaggccagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcctttaatcccagcactagggaggcagaggcaggtggatttctgagtttgaggccagcc 677
Query: 481 tgatctacagagtgagttccaggacagccagggctacacagagaaacccccccccc---a 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 678 tgatctacagagtgagttccaggacagccagggctacacagagaaaccccccccccccaa 737
Query: 538 aaaaagaagaagtctcattccacttggttaattgtgctgttctgagactccaagtgtcac 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaaagaagaagtctcattccacttggttaattgtgctgttctgagactccaagtgtcac 797
Query: 598 cttttttgttctggttcttccctggatccttctggccattcctgtctcataaactgagct 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 cttttttgttctggttcttccctggatccttctggccattcctgtctcataaactgagct 857
Query: 658 gacaatacctggtgtcacaggtcgcagcatcctgctg 694
|||||||||||||||||||||||||||||||||||||
Sbjct: 858 gacaatacctggtgtcacaggtcgcagcatcctgctg 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
