BAC Information

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BAC

Clone NameMSMg01-487C15
Chromosome8 (Build37)
Map Location 31,347,929 - 31,472,738
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041237, EG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487C15.T7 (MSMg01no487_c15.b1)MSMg01-487C15.TJ (MSMg01no487_c15.g1)
ACCAG566193AG566194
length764737
length of high quality
(start - end)		666 (72 - 737)647 (81 - 727)
definitionCHROMAT_FILE: MSMg01no487_c15.b1 PHD_FILE: MSMg01no487_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:41 2005CHROMAT_FILE: MSMg01no487_c15.g1 PHD_FILE: MSMg01no487_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,347,929 - 31,348,594)(31,472,092 - 31,472,738)
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAGGATGCGCGGA
ATTAATGCCCTTCAAAAAAGAATAGGCTAACAGAATGGATGGGGGAAAAA
AAGGAGCCATCATTCTTCTGCACGCAAGAAACATGTGTCACAAAGATAGA
CATTACTTCAGAGTAAAGGTCTGGAAAAAAACGTTTTCCAAGAAATTTTG
TCCAAGAAGCAAACTGAGGTAGTCATTTTAATATCTAATAAAATAGATTT
TCAACCAAAATTAATTAAAATGAATGGGTGAAAACTTCATGTTTTTCAAA
TGAAAAAATACATCAAGATGGTATCTCAATTTTGAGATCAGAATCAGATC
TAGGGAAAGGCAGAAGAGACGGCCTGATGGACTTGAAACTGAATGAAATT
CTACAACTAATGGGTATGAAGAGGTGGTGGGTATCTAAGGGAGGTAGGTG
CTAAAGAATCATTGGGAGTGACCTAAGACAGTCTTACTACATTGGGGATG
TGGAACCTGAAGAGGCCACTTCCTGTTGCCTGTCATGAACCCCAGCAGAA
CTAGAGACACCAACCCACCCCCAAAACTTTCAACCCCCAATTTATCCTGT
CTACAAAAATGCCAGAATGAGGGATGGGACAGAGAATGAAGGAATGGCCA
ATCAATAACTGGCACAGCTTGGCACCTATCCCATAAGCAAGCACCAATCC
CAGACACTATTAATAATACTCCGTTATGCTTGTAGACAGGAACAAGTTGT
CCTCTGAGAGACTN

TGGGCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTATATACACACGAACCA
TTTTTATGTATTAAAAGAAATGAGTTTTTGAGTATTGCATATAGCATGAA
AAATAAGAGAAACTGAAAGTCTATAAGTAAATATTTAAAGAATCAGTCTG
GTATGTTTGCTGTTAAATCTTGTTATCTGGTAGCATCAAATCTACTGAAT
CTATCACGTTATTTACAAAGAGAGCCATGCTACATCTACAGTAATCCAAA
TGAGTTTTTCTTTTAACTGGTCTAAAACACTACTTTCATGTAAAATTGAT
ACCCCTAAGGCATCGTTTTTAATTGTCCTTTTATGAAGTAAAAGGCAATT
TAACACACACTGAAACAAAGAAGATTATAATAGCCAAGTATGACCTACAA
ATATTATGCCCTGAAAGTCATCTGCAGAATGCCATCCAAGTGACCGTCAT
GGAACATATGCAGTACAATGTCAAGAAGCACAGTACCGAAGCCTGCTTTT
CTGTCAACAGAAGAGAAAGACACATTTGCCACAGTGTTTTGAGTGGTACA
TATATAATGGAAAGGCTCAACAGCTCAGGTACTTTTAATCATTGGTAACA
TAAGCTACAGGGGAAAATATTTTTGGTTTATTTTATGACTGCTTTTCAAA
AACATGATGTGTTCATGATTATTCAGGCCAGCTCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_c15.b1 MSMg01no487_c15.b1 CHROMAT_FILE:
MSMg01no487_c15.b1 PHD_FILE: MSMg01no487_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:41 2005
         (666 letters)



>mm_chr8_31347729_31348794
          Length = 1066

 Score = 1288 bits (666), Expect = 0.0
 Identities = 666/666 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggctaacagaatggatgggggaaaaaaaggagccatcattcttctgcacgcaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataggctaacagaatggatgggggaaaaaaaggagccatcattcttctgcacgcaagaaa 260

                                                                       
Query: 61  catgtgtcacaaagatagacattacttcagagtaaaggtctggaaaaaaacgttttccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgtcacaaagatagacattacttcagagtaaaggtctggaaaaaaacgttttccaa 320

                                                                       
Query: 121 gaaattttgtccaagaagcaaactgaggtagtcattttaatatctaataaaatagatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaattttgtccaagaagcaaactgaggtagtcattttaatatctaataaaatagatttt 380

                                                                       
Query: 181 caaccaaaattaattaaaatgaatgggtgaaaacttcatgtttttcaaatgaaaaaatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaccaaaattaattaaaatgaatgggtgaaaacttcatgtttttcaaatgaaaaaatac 440

                                                                       
Query: 241 atcaagatggtatctcaattttgagatcagaatcagatctagggaaaggcagaagagacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaagatggtatctcaattttgagatcagaatcagatctagggaaaggcagaagagacg 500

                                                                       
Query: 301 gcctgatggacttgaaactgaatgaaattctacaactaatgggtatgaagaggtggtggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgatggacttgaaactgaatgaaattctacaactaatgggtatgaagaggtggtggg 560

                                                                       
Query: 361 tatctaagggaggtaggtgctaaagaatcattgggagtgacctaagacagtcttactaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatctaagggaggtaggtgctaaagaatcattgggagtgacctaagacagtcttactaca 620

                                                                       
Query: 421 ttggggatgtggaacctgaagaggccacttcctgttgcctgtcatgaaccccagcagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggggatgtggaacctgaagaggccacttcctgttgcctgtcatgaaccccagcagaac 680

                                                                       
Query: 481 tagagacaccaacccacccccaaaactttcaacccccaatttatcctgtctacaaaaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagagacaccaacccacccccaaaactttcaacccccaatttatcctgtctacaaaaatg 740

                                                                       
Query: 541 ccagaatgagggatgggacagagaatgaaggaatggccaatcaataactggcacagcttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccagaatgagggatgggacagagaatgaaggaatggccaatcaataactggcacagcttg 800

                                                                       
Query: 601 gcacctatcccataagcaagcaccaatcccagacactattaataatactccgttatgctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcacctatcccataagcaagcaccaatcccagacactattaataatactccgttatgctt 860

                 
Query: 661 gtagac 666
           ||||||
Sbjct: 861 gtagac 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_c15.g1 MSMg01no487_c15.g1 CHROMAT_FILE:
MSMg01no487_c15.g1 PHD_FILE: MSMg01no487_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:42 2005
         (647 letters)



>mm_chr8_31471892_31472938
          Length = 1047

 Score = 1189 bits (615), Expect = 0.0
 Identities = 639/647 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactatatacacacgaaccatttttatgtattaaaagaaatgagtttttgagtattgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cactatatacacacgaaccatttttatgtattaaaagaaatgagtttttgagtattgcat 788

                                                                       
Query: 61  atagcatgaaaaataagagaaactgaaagtctataagtaaatatttaaagaatcagtctg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 787 atagcatgaaaaataagagaaactgaaagtctataagcaaatatttaaagaatcagtctg 728

                                                                       
Query: 121 gtatgtttgctgttaaatcttgttatctggtagcatcaaatctactgaatctatcacgtt 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 727 gtatgtttgctgttaaatcttgttatctggtagcatcaaatttactgaatctatcacgtt 668

                                                                       
Query: 181 atttacaaagagagccatgctacatctacagtaatccaaatgagtttttcttttaactgg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 667 atttacaaagagagccatgctacctctacagtaatccaaatgagtttttcttttaactgg 608

                                                                       
Query: 241 tctaaaacactactttcatgtaaaattgatacccctaaggcatcgtttttaattgtcctt 300
           || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 607 tccaaaacactactttcatgtaaaattgatacccctaaggcatagtttttaattgtcctt 548

                                                                       
Query: 301 ttatgaagtaaaaggcaatttaacacacactgaaacaaagaagattataatagccaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttatgaagtaaaaggcaatttaacacacactgaaacaaagaagattataatagccaagta 488

                                                                       
Query: 361 tgacctacaaatattatgccctgaaagtcatctgcagaatgccatccaagtgaccgtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 487 tgacctacaaatattatgccctgaaagtcatctgcagaatgccatccaagtgaccgttat 428

                                                                       
Query: 421 ggaacatatgcagtacaatgtcaagaagcacagtaccgaagcctgcttttctgtcaacag 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 427 ggaacatatgcagtacaatgtcaagaagcacattaccgaagcctgcttttctgtcaacag 368

                                                                       
Query: 481 aagagaaagacacatttgccacagtgttttgagtggtacatatataatggaaaggctcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagagaaagacacatttgccacagtgttttgagtggtacatatataatggaaaggctcaa 308

                                                                       
Query: 541 cagctcaggtacttttaatcattggtaacataagctacaggggaaaatatttttggttta 600
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagctcaggtacttttaatcattagtaacataagctacaggggaaaatatttttggttta 248

                                                          
Query: 601 ttttatgactgcttttcaaaaacatgatgtgttcatgattattcagg 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttttatgactgcttttcaaaaacatgatgtgttcatgattattcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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