Query= MSMg01no487_o23.b1 MSMg01no487_o23.b1 CHROMAT_FILE:
MSMg01no487_o23.b1 PHD_FILE: MSMg01no487_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:41 2005
(640 letters)
>mm_chr8_17133899_17134940
Length = 1042
Score = 1094 bits (566), Expect = 0.0
Identities = 623/642 (97%), Gaps = 2/642 (0%)
Strand = Plus / Minus
Query: 1 tggtgatgaacagcagtatggaagtgtaagctgaataaaccctttcctccccaacttgtt 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 tggtcatgaacagcagtatggaagtgtaagctgaataaaccctttcctccccaacttgtt 888
Query: 61 tcttggtcatgatgtttgtgcaggaatagaaaccctgactaaaaaacatggtctcacatc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 887 tcttggtcatgatgtttgtgcaggaatagaaaccctgactaaaacacatggtctcacatc 828
Query: 121 atctctcctctcatgtttgactctgtgtctctactgtttaaatgtccttttcctacaagt 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 827 atctctcctctcatgtgtgactctgtgtctctactgtttaaatgtccttttcctacacgt 768
Query: 181 actgtatcaccttcattgtgacaggccactcccagag-aactgtctctgaaggagtcaca 239
||||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct: 767 actgtatcaccctcattgtgacatgccactcccagagaaactgtctccgaaggagtcaca 708
Query: 240 ttgtgtggtctttgatgatcagaacttcaatgcacagatgagcacccacagctcagccaa 299
|||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 707 ttgtgtggtcttcgaggatcagaacttcagtgcacagatgagcacccacagctcagccaa 648
Query: 300 taacattattacctgtatgattttgatacttagctttacagtaagcaaagtacaatagtt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 taacattattacctgtatgattttgatacttagctttacagtaagcaaagtacaatagtt 588
Query: 360 tatataagaactctgttcagtcagggaatctaatactttctgagcaattattatacacat 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 587 tatataagaactctgttcagtcagggaatctaatactttctgagcaatcattataaacat 528
Query: 420 attcatttgtgcagtaggaacatataactgattcagtaactgaactagagagttcagaag 479
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 527 attcatttgtgcagtaagaatatataactgattcagtaactgaactagagagttcagaag 468
Query: 480 atgaaaacagcaagtgaaagttgatatccaaataattatgagacacaaaa-aaaggccac 538
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 467 atgaaaacagcaagtgaaagttgatatccaaataattatgagacacaaaataaaggtcac 408
Query: 539 agttgaagagagatgccagtcaggacacggtactgtcatccaggtgagtgaggcgctttt 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 407 agttgaagagagatgccagtcaggacatggtactgtcatccaggtgagtgaggggctttt 348
Query: 599 acggataatatataactgagttgggcttaatgaactgtagtg 640
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 acggataatatataactgagttgggcttaatgaactgtagtg 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1042
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1032
Effective search space: 650160
Effective search space used: 650160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_o23.g1 MSMg01no487_o23.g1 CHROMAT_FILE:
MSMg01no487_o23.g1 PHD_FILE: MSMg01no487_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:41 2005
(594 letters)
>mm_chr8_16987941_16988934
Length = 994
Score = 1087 bits (562), Expect = 0.0
Identities = 586/594 (98%)
Strand = Plus / Plus
Query: 1 ccagttaagtgtaggacagttgtttaaagattagaggcacaggtagtaggtggcaataga 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagttaagtgtaggaccgttgtttaaagattagaggcacaggtagtaggtggcaataga 260
Query: 61 ggtctgagggacactgggggtgagggtgactgaggttggaagagaacccaaccttgtttt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtctgagggacaccgggggtgagggtgactgaggttggaagagaacccaaccttgtttt 320
Query: 121 ccttttagctgtaaacacatattcatccagctactttcccaaacgtctggtagataagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttagctgtaaacacatattcatccagctactttcccaaacgtctggtagataagca 380
Query: 181 gaggagggtgttggcttctgcagtatctctcacgttgaacttgggcagcagaatgcgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggagggtgttggcttctgcagtatctctcacgttgaacttgggcagcagaatgcgaaa 440
Query: 241 cctttctaaaatacagacatacaacactgcctcccagatcatcctgctgactcgaggaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctttctaaaatacagacatacaacactgcctcccagatcatcctgctgactcgaggaat 500
Query: 301 ggaagattgactagaggaagtttcctgaccaatcacacagcaacaacaacacaacaacag 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ggaagattgactagaggaagtttcctgaccaatcacagagcaacaacaacacaacaacag 560
Query: 361 caacaacaacaacaaaaatcaatgcttcttatccgattagctgtttttactgctgcttct 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaaacaacaacaaaaatcaatgcttcttatccgattagctgtttttactgctgcttct 620
Query: 421 aaagttacagctttctctgctttaaacagatatttatctttccaaagaattggtaaaaat 480
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagttagagcttcctctgctttaaacagatatttatctttccaaagaattggtaaaaat 680
Query: 481 caggatatttgccatgtataaatatcctttaaaaataaataaaagtaatgttaaaagcta 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 681 caggatatttgccatgtataaatatcatttaaaaataaataaaagtaatgttaaaagcta 740
Query: 541 agtggccaaatgtgacctctaacatattttccttaaaaaggcatgtgggttcct 594
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 agtggccaaatgtgacctctaacatattttcctaaaaaaggcatgtgggttcct 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
