BAC Information

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BAC

Clone NameMSMg01-487P09
Chromosome8 (Build37)
Map Location 33,153,229 - 33,309,929
singlet/doubletdoublet
Overlap gene2010007E15Rik, EG666589
Upstream geneDusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
Downstream geneEG546052, LOC100042715, LOC628408, EG628412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P09.T7 (MSMg01no487_p09.b1)MSMg01-487P09.TJ (MSMg01no487_p09.g1)
ACCAG566799AG566800
length751748
length of high quality
(start - end)		675 (77 - 751)648 (81 - 728)
definitionCHROMAT_FILE: MSMg01no487_p09.b1 PHD_FILE: MSMg01no487_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:43 2005CHROMAT_FILE: MSMg01no487_p09.g1 PHD_FILE: MSMg01no487_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:43 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(33,153,229 - 33,153,903)(33,309,282 - 33,309,929)
sequence
NNCCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCAACGTTCAAAAATGCACACAAGTGGATAACTGCTACT
TATGGAAAATCTCCATCAGAATCCCTTTCCTTCTTTGCTTTGGTAGGCAT
CTTTTACCTTTTCTCTTTATTTTCTCTTACCAGGCTCATAATTTTACTTA
ACCTTGGCTATACAGAGATGTCTTATTCAGAAAAGAAGCAACAGAAGCTG
TGGTACCTTTAGCCTCATGCTGTCTGGACTAGACCACTTTCTCAGCATGA
ATCAAGTAGGGCTTGCCAACTGAGATGTGATAGCTTGTGTTTGAATCAGC
CAAGGCACTCGCTGATAGCAAAGTAAAGGGTCTCAGCTGATGTTAAACAA
CCTAATTGCAGGCTACAGCATGCTTGATGGGAAATCTCAGCTCAGCTGCA
AAGTTGGTTGGTAGCAAAAGACTAGGTCCATAGAGTATCTCTAACACAGA
GGATATATGATGCCCTAGATGACACAGTATTAGGGCTTCTGAGAAATTGG
TGAAGCCAACAGAACCAGTTTCAGTGGAATCTGACTCAGGTAGAATGGTA
TGACTAGCACATACATGTATGATATGGCTAGCACATATGGGAATCCCTTA
TTGCTTTTCAAGTAGACAGTTACAATATAGTTTTGGCTTCCTGACACCAA
TTTTTCTTCACATTGATGTATGTTTTATCAGCCACCAAAGTTACTTTCTT
A

NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAACAGAAAGAGAGGCA
GTTAGCTAAGAGTTTCAGAATGTTATACTGTAAGATGTGCCACCAGTCGT
AGGACCTTATGTACTTGCTACCAAAAAAATCTATTTTCAGCTCTATTCTT
CAGGTTTAAGGTTTGGCTGGGAGGATGGGGGTCCAACATTGTTCATGGAA
ATCTTGCCCTTAGTATTAGAATCCATTTATAAACTTACGTGGATGAGCTT
CTCAAATCCTTTCAGAAAACAATTTTTATTAAGATGTATAAACAAAAATT
AATTCTGTGTGCCCCTCAGCTGTAAGGTTGGCAGAGTTCCTGAGCTTTAA
CTTAAAGCTCCTAAGCATTGTTAACATGGGACCAATTTCTTCCTTGGGCC
ATAAATATATAATTACTCATGTTTTGTTTTAATTTCACAGAGGTATACAA
AATATCTTAAGCAAATCCACCACCTAATCCTTCCATGCAAAACCCAGTTT
AATCTCCCTTTCCAACTTCAAGACTTTTTTGGAACCAGTACTGTCCACAT
GTGCACAGCTGTGGGATTATTCACAAAGGCACAGGCAACCTGTCAGTGGC
CCCACCTCAAAGGAAAGTGAATCTCCTTGCTGTAGTAACCACGGGCTGCC
AAGTGCTCCTTGGATGGGAATGGGGCCTCAGGAGCCTCTTGGGAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p09.b1 MSMg01no487_p09.b1 CHROMAT_FILE:
MSMg01no487_p09.b1 PHD_FILE: MSMg01no487_p09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:43 2005
         (675 letters)



>mm_chr8_33153029_33154103
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacacaagtggataactgctacttatggaaaatctccatcagaatccctttccttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcacacaagtggataactgctacttatggaaaatctccatcagaatccctttccttcttt 260

                                                                       
Query: 61  gctttggtaggcatcttttaccttttctctttattttctcttaccaggctcataatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttggtaggcatcttttaccttttctctttattttctcttaccaggctcataatttta 320

                                                                       
Query: 121 cttaaccttggctatacagagatgtcttattcagaaaagaagcaacagaagctgtggtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaaccttggctatacagagatgtcttattcagaaaagaagcaacagaagctgtggtac 380

                                                                       
Query: 181 ctttagcctcatgctgtctggactagaccactttctcagcatgaatcaagtagggcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttagcctcatgctgtctggactagaccactttctcagcatgaatcaagtagggcttgc 440

                                                                       
Query: 241 caactgagatgtgatagcttgtgtttgaatcagccaaggcactcgctgatagcaaagtaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caactgagatgtgatagcttgtgtttgaatcagccaaggcactcgctgatagcaaagtaa 500

                                                                       
Query: 301 agggtctcagctgatgttaaacaacctaattgcaggctacagcatgcttgatgggaaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtctcagctgatgttaaacaacctaattgcaggctacagcatgcttgatgggaaatc 560

                                                                       
Query: 361 tcagctcagctgcaaagttggttggtagcaaaagactaggtccatagagtatctctaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagctcagctgcaaagttggttggtagcaaaagactaggtccatagagtatctctaaca 620

                                                                       
Query: 421 cagaggatatatgatgccctagatgacacagtattagggcttctgagaaattggtgaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaggatatatgatgccctagatgacacagtattagggcttctgagaaattggtgaagc 680

                                                                       
Query: 481 caacagaaccagtttcagtggaatctgactcaggtagaatggtatgactagcacatacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caacagaaccagtttcagtggaatctgactcaggtagaatggtatgactagcacatacat 740

                                                                       
Query: 541 gtatgatatggctagcacatatgggaatcccttattgcttttcaagtagacagttacaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtatgatatggctagcacatatgggaatcccttattgcttttcaagtagacagttacaat 800

                                                                       
Query: 601 atagttttggcttcctgacaccaatttttcttcacattgatgtatgttttatcagccacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atagttttggcttcctgacaccaatttttcttcacattgatgtatgttttatcagccacc 860

                          
Query: 661 aaagttactttctta 675
           |||||||||||||||
Sbjct: 861 aaagttactttctta 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_p09.g1 MSMg01no487_p09.g1 CHROMAT_FILE:
MSMg01no487_p09.g1 PHD_FILE: MSMg01no487_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:43 2005
         (648 letters)



>mm_chr8_33309228_33310275
          Length = 1048

 Score = 1253 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtaacagaaagagaggcagttagctaagagtttcagaatgttatactgtaagatgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 aagtaacagaaagagaggcagttagctaagagtttcagaatgttatactgtaagatgtgc 643

                                                                       
Query: 61  caccagtcgtaggaccttatgtacttgctaccaaaaaaatctattttcagctctattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 caccagtcgtaggaccttatgtacttgctaccaaaaaaatctattttcagctctattctt 583

                                                                       
Query: 121 caggtttaaggtttggctgggaggatgggggtccaacattgttcatggaaatcttgccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caggtttaaggtttggctgggaggatgggggtccaacattgttcatggaaatcttgccct 523

                                                                       
Query: 181 tagtattagaatccatttataaacttacgtggatgagcttctcaaatcctttcagaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tagtattagaatccatttataaacttacgtggatgagcttctcaaatcctttcagaaaac 463

                                                                       
Query: 241 aatttttattaagatgtataaacaaaaattaattctgtgtgcccctcagctgtaaggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aatttttattaagatgtataaacaaaaattaattctgtgtgcccctcagctgtaaggttg 403

                                                                       
Query: 301 gcagagttcctgagctttaacttaaagctcctaagcattgttaacatgggaccaatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gcagagttcctgagctttaacttaaagctcctaagcattgttaacatgggaccaatttct 343

                                                                       
Query: 361 tccttgggccataaatatataattactcatgttttgttttaatttcacagaggtatacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tccttgggccataaatatataattactcatgttttgttttaatttcacagaggtatacaa 283

                                                                       
Query: 421 aatatcttaagcaaatccaccacctaatccttccatgcaaaacccagtttaatctccctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aatatcttaagcaaatccaccacctaatccttccatgcaaaacccagtttaatctccctt 223

                                                                       
Query: 481 tccaacttcaagacttttttggaaccagtactgtccacatgtgcacagctgtgggattat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tccaacttcaagacttttttggaaccagtactgtccacatgtgcacagctgtgggattat 163

                                                                       
Query: 541 tcacaaaggcacaggcaacctgtcagtggccccacctcaaaggaaagtgaatctccttgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcacaaaggcacaggcaacctgtcagtggccccacctcaaaggaaagtgaatctccttgc 103

                                                           
Query: 601 tgtagtaaccacgggctgccaagtgctccttggatgggaatggggcct 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgtagtaaccacgggctgccaagtgctccttggatgggaatggggcct 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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