BAC Information

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BAC

Clone NameMSMg01-488F13
Chromosome8 (Build37)
Map Location 22,936,329 - 22,936,813
singlet/doubletsinglet
Overlap geneDefb50
Upstream geneLOC100041654, EG574083, AY761185, Defcr21, LOC100038926, Defcr23, LOC100041688, Defcr25, LOC626605, LOC634825, LOC100040619, LOC100038927, Defcr22, Defcr-rs7, LOC100041759, LOC672740, EG665969, LOC100041787, Defcr3, Defcr5, LOC100041811, Defcr-rs1, LOC100040668, LOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1
Downstream geneDefb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F13.T7 (MSMg01no488_f13.b1)MSMg01-488F13.TJ (MSMg01no488_f13.g1)
ACCAG567091AG567092
length740776
length of high quality
(start - end)		642 (64 - 705)648 (73 - 720)
definitionCHROMAT_FILE: MSMg01no488_f13.b1 PHD_FILE: MSMg01no488_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:14 2005CHROMAT_FILE: MSMg01no488_f13.g1 PHD_FILE: MSMg01no488_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCACCA
CATTCANATAAGAATGGCTAAAATAAAAAACTCATGTTGTAGCAGATGCT
GGCAAGGATGTGCAGAAAGAGGAACACTCTTCCATTACTGGTGGGATTGC
AAGCTGATAAAAAGTCTCTGGAAATCAGTTTGGCGGTTCCTCAAAAAACT
GGACATGGTACAGCCTGAAAATCCAGCTATACCACTTCTGGTCATATACC
CAGAAGATGCTCTAACATGTAATAAAGACACATGCTCCACTATGATCATA
GAAGTCTTATTTTTTTTAGCTATGAGCTGGAAAGAGCCCAGATGTCCTTT
AACAGAGGAATGGATAAAAAATTTTGGTTCAACTACCAATGAATTACTAC
TCAGCTATTAACAATGATGAATTCATGAAATTCTTTTTTAAACAATTTTT
ATTAGATATTTTCTTCATTTACATTTCAAATGCTATCGTGAAAGTCCCCT
ATACCCTCCCCCTGCCCTGCCCCCCCAATCCAACCACTCCTCTTCTTGGC
CCTGGCATTCCCCTGTACTTGGGAATATAAAGTTTGCAAAACCAAGGGGC
CTCTCTTTCCTATGATGGCTGACTAGGTCATCTTCTGCTATATATGCTAC
TAGAGGCACAGGCTCTGGGGGTACTGGTTAGTTCATATGGTTGTTCCTCC
TATAGGGTTTCAAACCCCTTCTGATAATTGGGTAATTTCA

CGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCCGCGAAATTCCAGTTACCTTTCCTTGTATAGCTC
CTTTCTATTTGTGGGACTGAGAACTCTAAAACTCAGGTTGAGCTGATACT
CATTTAGCAGAGAATTTTATATTGAGCCTTAGAAAGTACTTAGCAAGGTC
ATGGCAGATTAGCAGGTACATGTTTTCTCCAAGAAATATACCTCAGTAGC
AAACACACACACTGATGAAAAAGACAGATCCAAGGTCAAAGTATTGAGCA
AATGAATGTTGGATCAACCATTTTAGTATCTGACAAAGTTGACTTCAATT
AAAAGAATCAAAGAGATCAAGAAAGCCACTACATATTAAAAATGGGATTA
ATATGTCAAGAAGAAATTATATATATGTATATGCATATATATGTCTATAT
ATATGTATTGACTAACTAACAGGGATCTTGATTTCATAAAGCAAACATTA
GTGGACACAAAAGGACATGTAGGCCTAGATAAAATAGCAATAGGTGATTT
CAATACACCTCTTGTATTAGGGTGAAGTAAATGAGAAAGATTCAAAGTTG
AGTTTCATCATAGACACACTCAGAAATCTATGTCAAGAAAACCTGTAAAA
TCATACATCTATAGCAAGAAAACCTGTAAAATCTATATGAATACACTGAA
ATAGAATAATACATTCTTCATGATAGGTNAAGAAATGGAGTAGAATATTT
TAAAATTTCTGTGATCAACGAACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f13.g1 MSMg01no488_f13.g1 CHROMAT_FILE:
MSMg01no488_f13.g1 PHD_FILE: MSMg01no488_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:14 2005
         (648 letters)



>mm_chr8_22935766_22936813
          Length = 1048

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Minus

                                                                        
Query: 164  atatacctcagtagcaaacacacacactgatgaaaaagacagatccaaggtcaaagtatt 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 atatacctcagtagcaaacacacacactgatgaaaaagacagatccaaggtcaaagtatt 989

                                                                        
Query: 224  gagcaaatgaatgttggatcaaccattttagtatctgacaaagttgacttcaattaaaag 283
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 988  gagcaaatgaatgttggatcaaccattttagtatctgacaatgttgacttcaattaaaag 929

                                                                        
Query: 284  aatcaaagagatcaagaaagccactacatattaaaaatgggattaatatgtcaagaagaa 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  aatcaaagagatcaagaaagccactacatattaaaaatgggattaatatgtcaagaagaa 869

                                                                        
Query: 344  attatatatatgtatatgcatatatatgtctatatatatgtattgactaactaacaggga 403
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 868  attatatatatgtatatgcatatatatgtatatatatatgtattgactaactaacaggga 809

                                                                        
Query: 404  tcttgatttcataaagcaaacattagtggacacaaaaggacatgtaggcctagataaaat 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  tcttgatttcataaagcaaacattagtggacacaaaaggacatgtaggcctagataaaat 749

                                                                        
Query: 464  agcaataggtgatttcaatacacctcttgtattagggtgaagtaaatgagaaagattcaa 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  agcaataggtgatttcaatacacctcttgtattagggtgaagtaaatgagaaagattcaa 689

                                                                        
Query: 524  agttgagtttcatcatagacacactcagaaatctatgtcaagaaaacctgtaaaatcata 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  agttgagtttcatcatagacacactcagaaatctatgtcaagaaaacctgtaaaatcata 629

                                                                        
Query: 584  catctatagcaagaaaacctgtaaaatctatatgaatacactgaaatagaataatacatt 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  catctatagcaagaaaacctgtaaaatctatatgaatacactgaaatagaataatacatt 569

                 
Query: 644  cttca 648
            |||||
Sbjct: 568  cttca 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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