BAC Information

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BAC

Clone NameMSMg01-488K07
Chromosome8 (Build37)
Map Location 66,340,908 - 66,341,153
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3, LOC384831
Downstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488K07.T7 (MSMg01no488_k07.b1)MSMg01-488K07.TJ (MSMg01no488_k07.g1)
ACCAG567317AG567318
length747687
length of high quality
(start - end)
244 (80 - 323)631 (57 - 687)
definitionCHROMAT_FILE: MSMg01no488_k07.b1 PHD_FILE: MSMg01no488_k07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:37 2005CHROMAT_FILE: MSMg01no488_k07.g1 PHD_FILE: MSMg01no488_k07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGACGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CCGCGGAATTCATANATACCTTTACTGGGTTTAACATTATATGCTAACAA
CTTATTAGTCTCAACAATTACTATTGATTCAGGTTTTATTTACATGGAGT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTATATGTTTTCAGGTAG
GCATGCTTGTTCTTCCTTGTGTGGAGGCCAGAGATCTACTTGGGAGTGTT
TGTCTTTTGATGTGCATTGTATTGTTTAAGAAGCAGATAAATGTAAATAA
ATAAAATATCCAATTAAAAAATTTTTTTTTTTTTATGTCACTGAGCCCAG
AGGTCGCTGATTCTGTAAGACTAAGTTATTGTGGAGCCACAGAGACCTGT
CAGTCTTCAGCCTTCTGTACCACCGCTCCCGGTATTATTACACAGCTGTT
GAGGATTTGAACAGAGGATTCTAAGCTGGCACGGCTCTTTAAGCCATATA
TCATCATCATCATCATCATCATCATCCCCCTGTCATATGATTGAATGGTA
GTTTGATGTTGACAATAAATGGATAAAGATACTTTCAGGTCTGTCTCTTA
TCAGCTGCACCGTTTGGGAATGTGGACTATGTACCTCATCTGGGCAGCAC
AATATGGCTGATCCTGGTGGTACAGTCATGGGTGAGCCAGTCCAGAGGGC
ATGAGAGTGAGAAAGCTGGCTCTGCTCCTGTCAAACTACCATTGTAT
TGGCGGCCGCCTGTTTCAAGACAGGAGNGTGAACTATAGAAGTACTAAAA
AAAGTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAATTG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAATCTGGCGGTTCCTTT
TTTTTTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_k07.b1 MSMg01no488_k07.b1 CHROMAT_FILE:
MSMg01no488_k07.b1 PHD_FILE: MSMg01no488_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:37 2005
         (244 letters)



>mm_chr8_66340605_66341248
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/246 (98%), Gaps = 4/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaacattatatgctaacaacttattagtctcaacaattactattgattcaggttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tttaacattatatgctaacaacttattagtctcaacaattactattgattcaggttttat 490

                                                                       
Query: 61  ttacatggagt----tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtatatgttttca 116
           |||||||||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttacatggagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtatatgttttca 430

                                                                       
Query: 117 ggtaggcatgcttgttcttccttgtgtggaggccagagatctacttgggagtgtttgtct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggtaggcatgcttgttcttccttgtgtggaggccagagatctacttgggagtgtttgtct 370

                                                                       
Query: 177 tttgatgtgcattgtattgtttaagaagcagataaatgtaaataaataaaatatccaatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tttgatgtgcattgtattgtttaagaagcagataaatgtaaataaataaaatatccaatt 310

                 
Query: 237 aaaaaa 242
           ||||||
Sbjct: 309 aaaaaa 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)