Query= MSMg01no489_k17.b1 MSMg01no489_k17.b1 CHROMAT_FILE:
MSMg01no489_k17.b1 PHD_FILE: MSMg01no489_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:59 2005
(610 letters)
>mm_chr8_60345858_60346867
Length = 1010
Score = 1141 bits (590), Expect = 0.0
Identities = 605/610 (99%)
Strand = Plus / Plus
Query: 1 cagtggaatcttgaggtttatttttctgtattattatcaccatgattctttaaaaccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtggaatcttgaggtttatttttctgtattattatcaccatgattctttaaaaccatc 260
Query: 61 acatgctatggtggtttgaataggcatggctctcatagactcatgtgcccatggagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgctatggtggtttgaataggcatggctctcatagactcatgtgcccatggagagtg 320
Query: 121 tcattattaggagatgtggccttgctggaggaagtgtgtcactgtgaaggtgggctttga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattattaggagacgtggccttgctggaggaagtgtgtcactgtgaaggtgggctttga 380
Query: 181 ggtctcatacataggctcaagccatgcccagtgttaagacgatgtcctctgctggcattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtctcatacataggctcaagccatgcccagtgttaagacgatgtcctctgctggcattg 440
Query: 241 gataaagacgtatgactcttagcttctggtccagcaccatgtctgcttgcatgctgccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataaagacgtatgactcttagcttctggtccagcaccatgtctgcttgcatgctgccat 500
Query: 301 gttcctcaccatgatgacaatggactaagcctctgacactgtaagccagcacaaattaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 gttcctcaccatgatgacaatggactaagcctctgacactgtaagccagcacatattaaa 560
Query: 361 tgttttcctttagcagaattgctgtggtcaacattcctcgtcacagcaataaaaccctaa 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 tgttttcctttagcagaattgctgtggtcaacatttctcgtcacagcaataaaaccctaa 620
Query: 421 cgaacacagatgccttctttataaccttccaatgtgtttcaattgcttctagaataacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgaacacagatgccttctttataaccttccaatgtgtttcaattgcttctagaataacaa 680
Query: 481 cacaaccttttgtttatttgtctctaatgacaatgtccttctccctggccaggatcattt 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacaactttttgtttatttgtctctaatgacaatgtccttctccctggccaggatcattt 740
Query: 541 tttaactcatcagagatttgctgcccaatgagaattctgccctctttctctgttgtttgc 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 tttaactcatcagagatttgctgcccaatgagaattctgctctctttctctgttgtttgc 800
Query: 601 ttttcacatt 610
||||||||||
Sbjct: 801 ttttcacatt 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_k17.g1 MSMg01no489_k17.g1 CHROMAT_FILE:
MSMg01no489_k17.g1 PHD_FILE: MSMg01no489_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:59 2005
(618 letters)
>mm_chr8_60489019_60490033
Length = 1015
Score = 1087 bits (562), Expect = 0.0
Identities = 603/618 (97%), Gaps = 3/618 (0%)
Strand = Plus / Minus
Query: 1 ctcacatctctctggagttcccaatattcagtagagtcaaagaagtctgtgaaaatgagg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 815 ctcacatctctctggagttcccaatattcagtagagtcaaagaagcctgtgaaaatgagg 756
Query: 61 agacaaagtaacccaaatcattcccccatatatagtagccaacataaacaatcagtagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 755 agacaaagtaacccaaatcattcccccatatatagtagccaacataaacaatcagtaaac 696
Query: 121 taaaatggtggaaagaataagaaaagaggattcaatagagatacagaccaaaaataaata 180
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 695 taaagtggtggaaagaataagaaaagaagattcaatagagatacagaccaaaaataaata 636
Query: 181 ggagaagggacctgtgcctaggcttcatgttggttgtgaccaggagtggccaagttagag 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 635 ggagaagggacctgtgcctaggcttcatgttgattgtgaccaggagtggccaagttagag 576
Query: 241 caaatgtttgcctgttggaaaaatgagttggttataggtagaaaagttagagtaagcacc 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 caaatgtaagcctgttggaaaaatgagttggttataggtagaaaagttagagtaagcacc 516
Query: 301 attatagaatgaccttgtcacttttgtctgtcttcataaacatgtcccttttagaaagga 360
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 515 attatagaatgatcttgtcacttttgtctgtcttcataaacatgtgccttttagaaagga 456
Query: 361 agaactaaacagcacaggttagctggactgtccatatacctcttgttaattttgatcaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agaactaaacagcacaggttagctggactgtccatatacctcttgttaattttgatcaat 396
Query: 421 tactctacaaagctctctcccaaattaaagaaagctttgtgataaggactgataagtact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tactctacaaagctctctcccaaattaaagaaagctttgtgataaggactgataagtact 336
Query: 481 gtgctatattttagtttcactcctccagcaagaggacatttactataaaataccattaag 540
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 335 gtgctatattttaatttcactcc---agcaagaggacatttactataaaataccattaag 279
Query: 541 aaccaagctataattaaacatgattgttgttctatgcaacctccaagacaagaatccaaa 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaccaagctataattaaatatgattgttgttctatgcaacctccaagacaagaatccaaa 219
Query: 601 atattataaagcatgcat 618
|||||||| |||||||||
Sbjct: 218 atattatagagcatgcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1015
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1005
Effective search space: 611040
Effective search space used: 611040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
