BAC Information

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BAC

Clone NameMSMg01-489L04
Chromosome8 (Build37)
Map Location 115,857,928 - 115,858,164
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489L04.T7 (MSMg01no489_l04.b1)MSMg01-489L04.TJ (MSMg01no489_l04.g1)
ACCAG568118AG568119
length733727
length of high quality
(start - end)
564 (77 - 640)237 (79 - 315)
definitionCHROMAT_FILE: MSMg01no489_l04.b1 PHD_FILE: MSMg01no489_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:02 2005CHROMAT_FILE: MSMg01no489_l04.g1 PHD_FILE: MSMg01no489_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTTACCNAAACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCATCTGGCGG
TTCCTCAGAAAATTGGACATATTTCTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTACCCATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTTC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACTAAGGAACTCATACAATATGTACTCACTGATAAGTGGATATTAGCC
CAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAT
ACTCACGAAAAATGAAAACTGAAGTGTGGACCC
ATTTCCCGATGAAGTGGGAGGCCTGGNGGCCGCCTGTTTCAAAATGGGGG
TGAACTATAGAAGTACTAACAAAAGGCAAAGAGCTTCCTGCTGGTTTCCT
GCTTGGTCTTTATTGTTTAAGGGCCCTGCATGTGTTCATATCATGAAATA
AGAGTCACAAAGTCACACCTGAAGCTTGCTGCTCATTAGAGAGATTATGT
TGGAAGTTGATAGACGGCTTTTGAAAGCTCATTTGATGACTGCCTAGAAT
TCTTATCTTTGCAGACTCACCAACCCCATAGGCACTGTAAATATAAGAAA
CAGGCAAAATTATATTTTTGNTTCCTGAAGGCAGCCAAAAACAGAGACAA
GGCTGAGATCTGAGCTTTCATTTATCTTTTACAATGGCCTAAATAAAATT
ATTGGGATAAATTATGGCATGCCCGCTGGACTGAGTATCAATGGGTCAGA
CTGATCTGAAACAGTGGTTTTGCTTTCTCACCTAACACAAATTGACATTT
CAGCTGTATTAAATATAGTGCAAATAATAGGTCTGGTTATTCGAACTCAG
GGAAATTTTGGAATTTCTCTGGTGGAGGAGGGCTCTTTCTATACTTCTTT
ATATTTACTTTCTAAATATTTTAAAGATCTTTCAACGCTCATGCACGATA
AATACTCAAGATTGGGACACAGATAAGGAAGGGAAGATAGAAGTAAAAGC
TTGTTTACCTTCATAAACATTGTCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_l04.g1 MSMg01no489_l04.g1 CHROMAT_FILE:
MSMg01no489_l04.g1 PHD_FILE: MSMg01no489_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:02 2005
         (237 letters)



>mm_chr8_115857728_115858364
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagcttcctgctggtttcctgcttggtctttattgtttaagggccctgcatgtgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagagcttcctgctggtttcctgcttggtctttattgtttaagggccctgcatgtgttca 378

                                                                       
Query: 61  tatcatgaaataagagtcacaaagtcacacctgaagcttgctgctcattagagagattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatcatgaaataagagtcacaaagtcacacctgaagcttgctgctcattagagagattat 318

                                                                       
Query: 121 gttggaagttgatagacggcttttgaaagctcatttgatgactgcctagaattcttatct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 317 gttggaagttgatagacggcttttgaaagctcatttgatgactgcctagaagccttatct 258

                                                                    
Query: 181 ttgcagactcaccaaccccataggcactgtaaatataagaaacaggcaaaattatat 237
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 257 ttgcagactcaccaaccccataggcactgtaaatataaggaacaggcaaaattatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)