BAC Information

Click to search

BAC

Clone NameMSMg01-490L23
Chromosome8 (Build37)
Map Location 75,767,417 - 75,768,046
singlet/doubletsinglet
Overlap geneLarge
Upstream geneAp1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490L23.T7 (MSMg01no490_l23.b1)MSMg01-490L23.TJ (MSMg01no490_l23.g1)
ACCAG568905AG568906
length767760
length of high quality
(start - end)
648 (79 - 726)630 (76 - 705)
definitionCHROMAT_FILE: MSMg01no490_l23.b1 PHD_FILE: MSMg01no490_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:25 2005CHROMAT_FILE: MSMg01no490_l23.g1 PHD_FILE: MSMg01no490_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAATCCGCG
GAATTCTATCAGACCTCCCAAAAGACCGAATACCAATACTCTATACTCAA
TATTATTCCACAAACTAGAAACAGAAGGAACATTATTCAATTTGTTCTAT
GAAGCCAGAGTTAGGCTGATACCAAAAACAAAGACCCAACAAAAAAAGAG
ATGTTCAGAGCAATTTTCCTTATAAATATTAATGCAAAAATACCCAATAA
AATTCTTGGCAACAGAATCCAAGAACACATCAAAATGATCATTCACCATG
ATCCAGTAGACTTGATCCCAGGGATGTTTGGATAGTTCAATATGTGGAAA
TCTATCAATGTAATACACTACATAAACAAAATCAAGGAAAAAAAAGAAAC
ATGATCATTTCATTAGATGCTGAGAAAGCATTTAACAAAATTCAACATCC
CTTCATGTTAACAGTATTGTAAAGATCAGGAATTCAGGGCCCTTATGTAA
ACAAAGTAAAAGCAATATACAGCAAACCAGTAGCCAACATCAAATGAAAT
GGTGAGAAACTTGAAGCAACCCCACTCAAATCAGGAACTAGACAAGGGCT
GCCCTCTCTCTCCCAGTCTATTCAATACAGTACTTGAAGTTCCAGCTAGA
GCAATTAGACAACAAAAGAAGGTCAAAGAGATACAAATTGGAAAGGAAGA
AGGCAAAATATCACTATTTGCAGATGACATTATAGTATACTTAAGTGACT
CCAAAAACTCCACCAGA
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCTGTGTCACCAGTACTTTCT
CTTCTGTTTCTTTATTTTGCTGACTTACATTGGTAGCTCTTCATATGTAA
TTTACAAGCAGAATCACCCCTGTTTGCTAGTTAGTTGATCTCCTGTTATT
GGTTCTCACTGCATGGATTATATACCTTTGTTTCCTTCCAGTAGTGCCTG
GGTTATGTGGCTCCAAAAGTGTTTCTGGAATGAGAAGACTCAGGTGATGG
GAGGCTCTCCCATGGGTGCTTAGTGCATGACATCTTGTGGGCAGACGTGC
CCCACTCTGTGAGATTACAGGGGCTTCTCTGCTGTATCACTCGTTTCTGG
GGACATTCTGCAAGGGGCTGGGCATATCACTGTTTTTCCACCCAGGCAGG
CTTTCAGTAGTGTTCTAGAAAAAAAGAAGACCTCATCAATCTGGAGGAAT
GATAATTGATTAAAGAGGTTTCCAGTCCACCTATGCAAACCATTTGGAAT
TCACTGTTCTTCATCCCAAGGGTCATGGAGGTTGCTGTTTTTAATTGAGT
CACATGGTGTTAGGTGGGATGTATGATTCCTGTTGTCACAGAGTGCTTTC
GACTTTACTGTGGTGACTATGGGTCTCACCTCAGTTTGTTGTGTTCCCAT
GGTTGCCTCCATGAAGGACTTGTGAATATCCTAGGGTCTGCATTTGTAGC
AATATCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_l23.g1 MSMg01no490_l23.g1 CHROMAT_FILE:
MSMg01no490_l23.g1 PHD_FILE: MSMg01no490_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:25 2005
         (630 letters)



>mm_chr8_75767217_75768246
          Length = 1030

 Score = 1195 bits (618), Expect = 0.0
 Identities = 627/630 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctctgtgtcaccagtactttctcttctgtttctttattttgctgacttacattggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tgtctctgtgtcaccagtactttctcttctgtttctttattttgctgacttacattggta 771

                                                                       
Query: 61  gctcttcatatgtaatttacaagcagaatcacccctgtttgctagttagttgatctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gctcttcatatgtaatttacaagcagaatcacccctgtttgctagttagttgatctcctg 711

                                                                       
Query: 121 ttattggttctcactgcatggattatatacctttgtttccttccagtagtgcctgggtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttattggttctcactgcatggattatatacctttgtttccttccagtagtgcctgggtta 651

                                                                       
Query: 181 tgtggctccaaaagtgtttctggaatgagaagactcaggtgatgggaggctctcccatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgtggctccaaaagtgtttctggaatgagaagactcaggtgatgggaggctctcccatgg 591

                                                                       
Query: 241 gtgcttagtgcatgacatcttgtgggcagacgtgccccactctgtgagattacaggggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtgcttagtgcatgacatcttgtgggcagacgtgccccactctgtgagattacaggggct 531

                                                                       
Query: 301 tctctgctgtatcactcgtttctggggacattctgcaaggggctgggcatatcactgttt 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctctgctgtatcacttgtttctggggacattctgcaaggggctgggcatatcactgttt 471

                                                                       
Query: 361 ttccacccaggcaggctttcagtagtgttctagaaaaaaagaagacctcatcaatctgga 420
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctccgcccaggcaggctttcagtagtgttctagaaaaaaagaagacctcatcaatctgga 411

                                                                       
Query: 421 ggaatgataattgattaaagaggtttccagtccacctatgcaaaccatttggaattcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaatgataattgattaaagaggtttccagtccacctatgcaaaccatttggaattcact 351

                                                                       
Query: 481 gttcttcatcccaagggtcatggaggttgctgtttttaattgagtcacatggtgttaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gttcttcatcccaagggtcatggaggttgctgtttttaattgagtcacatggtgttaggt 291

                                                                       
Query: 541 gggatgtatgattcctgttgtcacagagtgctttcgactttactgtggtgactatgggtc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggatgtatgattcctgttgtcacagagtgctttcgactttactgtggtgactatgggtc 231

                                         
Query: 601 tcacctcagtttgttgtgttcccatggttg 630
           ||||||||||||||||||||||||||||||
Sbjct: 230 tcacctcagtttgttgtgttcccatggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)