Query= MSMg01no490_n03.b1 MSMg01no490_n03.b1 CHROMAT_FILE:
MSMg01no490_n03.b1 PHD_FILE: MSMg01no490_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:31 2005
(711 letters)
>mm_chr2_46379050_46380158
Length = 1109
Score = 1309 bits (677), Expect = 0.0
Identities = 699/707 (98%), Gaps = 2/707 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgtgctgcccctgtcttcagagtaaggcactgcctaggatgtcaggggcacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgtgctgcccctgtcttcagagtaaggcactgcctaggatgtcaggggcacc 264
Query: 65 atgctcttgagagtaagggggaatttatacctgtttccatgagaaatgaaggccacatat 124
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 265 atgctcttgagagtaagggggaatttatacctgtttccatgagaagtgtaggccacatat 324
Query: 125 aggatactgacactcaacaaaagcacgccttatttctctcaccagccctcatgctccttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggatactgacactcaacaaaagcacgccttatttctctcaccagccctcatgctccttc 384
Query: 185 tctcccaattcagttcccaaaatgtgaagcctaccagcttcactggacaatccttactta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcccaattcagttcccaaaatgtgaagcctaccagcttcactggacaatccttactta 444
Query: 245 aagcattgacagaattaaatgtgatatgaactattccactacatttttttttccaaaaca 304
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 aagcattgacagaattaaatgtgatatgaactattccactacattttttt--ccaaaaca 502
Query: 305 tgtatttatggtatttgctaacctttacagtgaaggaggaatttaatcataacacccaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtatttatggtatttgctaacctttacagtgaaggaggaatttaatcataacacccaaa 562
Query: 365 gaaataatatttgcaaattaccatagaatgtgtttattgtatttggggccaagacaaaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaaataatatttgcaaattaccatagaatgtgtttattgtatttggggccaagacaaaga 622
Query: 425 ttatacaattaaaaacgttgcctaaaagtatttccctcctttgaggattcagctaaattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttatacaattaaaaacgttgcctaaaagtatttccctcctttgaggattcagctaaattt 682
Query: 485 agaaaagaatctgttctcatgtttttatttaaacaaaaatattgagctttcaaaaatgca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agaaaagaatctgttctcatgtttttatttaaacaaaaatattgagctttcaaaaatgca 742
Query: 545 tcttagcagacacatacacagtgcatatacccacacagatgtattttgtattttataaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcttagcagacacatacacagtgcatatacccacacagatgtattttgtattttataaca 802
Query: 605 ctcttctctgattatcatatcatatgcatctaggtgtgcagtggagtgcagtttgaatga 664
||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct: 803 ctcttctctgattatcatatcatatacatctaggtgtgcagttgactgcagtttgaatga 862
Query: 665 gttaccgttaatgctgaacaagggctgtactctcttgctacccacac 711
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 863 gttaccgttaatgctgaacaagggctgtactctctttctacccacac 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1109
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1099
Effective search space: 770399
Effective search space used: 770399
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no490_n03.g1 MSMg01no490_n03.g1 CHROMAT_FILE:
MSMg01no490_n03.g1 PHD_FILE: MSMg01no490_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:31 2005
(641 letters)
>mm_chr8_35802122_35803162
Length = 1041
Score = 1239 bits (641), Expect = 0.0
Identities = 641/641 (100%)
Strand = Plus / Plus
Query: 1 attcataagctccatcatttccatgtatgccagcattgcaccagaccatgttattaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcataagctccatcatttccatgtatgccagcattgcaccagaccatgttattaaaca 260
Query: 61 tacattatttgaactgatgtaataattgtgttttgggggcacagcgtgatatttgaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacattatttgaactgatgtaataattgtgttttgggggcacagcgtgatatttgaatga 320
Query: 121 acaaatacgaagactaataatcaaatcaggggacctggcacgtctctcaccacaagctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatacgaagactaataatcaaatcaggggacctggcacgtctctcaccacaagctct 380
Query: 181 gaccctctcatgttgaaaacattcaaaattctctcttctatcgtcttcaaaatgtaccgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccctctcatgttgaaaacattcaaaattctctcttctatcgtcttcaaaatgtaccgt 440
Query: 241 ggctaccaatcatggtcaccctatggggctgtaggacatcagaaatcattcgtcctattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctaccaatcatggtcaccctatggggctgtaggacatcagaaatcattcgtcctattc 500
Query: 301 tgcttcacccttgtcctatcatagaaggaaaatttcagaagtccgccaggtcctaaggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttcacccttgtcctatcatagaaggaaaatttcagaagtccgccaggtcctaaggta 560
Query: 361 ctatttaagaagaggaagacaattctgtgctgatttggagaatagctgatccaaagtcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatttaagaagaggaagacaattctgtgctgatttggagaatagctgatccaaagtcat 620
Query: 421 acaaaaatatcatggcttatggtatttctagtaggatccaatttgttcacgtgaaattac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaaaatatcatggcttatggtatttctagtaggatccaatttgttcacgtgaaattac 680
Query: 481 tttagagcttgctgtagctctgtattcaccatcaagagctgcctgcatcaggggcgcagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttagagcttgctgtagctctgtattcaccatcaagagctgcctgcatcaggggcgcagg 740
Query: 541 ttaaaagatggctcagtggctaagagcattcactgttcttcccaagaaactaagtttgct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaaagatggctcagtggctaagagcattcactgttcttcccaagaaactaagtttgct 800
Query: 601 ttctgcacccatatcattgggcagctcagagctgttgcagg 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctgcacccatatcattgggcagctcagagctgttgcagg 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
