BAC Information

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BAC

Clone NameMSMg01-490N11
Chromosome8 (Build37)
Map Location 65,169,514 - 65,169,919
singlet/doubletsinglet
Overlap genenone
Upstream genePalld, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneSpock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N11.T7 (MSMg01no490_n11.b1)MSMg01-490N11.TJ (MSMg01no490_n11.g1)
ACCAG568976AG568977
length739850
length of high quality
(start - end)
412 (328 - 739)77 (80 - 156)
definitionCHROMAT_FILE: MSMg01no490_n11.b1 PHD_FILE: MSMg01no490_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:33 2005CHROMAT_FILE: MSMg01no490_n11.g1 PHD_FILE: MSMg01no490_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGACATCTATAATTTGCGGCCGCCAAANGAANCACAATCCCTATTTGGG
GNGNGGAATNNCCAGGTTCTAAAAATTGCGAGAACTGCCATGGCAGTTGA
AAGAGATTTAAAAAACAAATGCATGAAGGAACAGCTATTTGAGCTACTAT
TGAGGGATTACAATTTGTAGGAGCTTTTGGATTCAAAGGGGAATGTAAAG
GCCTCTTGTGATGTTTCTCTGGGTAAATACAGAAAGTATTTACTTAGGGA
AAGTAGAGAGACTTTTTGGAAATCATTGACAATATGTTGCTTGAGATTTT
AAGCTGATCTAACCAAGGTACTTTTCTTGTGCCTAATCATCTACCCATTC
ATTCTTCCACCCATCTACCATATACGAAGTCATCTATCCATTTCCCTGCA
CAATTGGGCGATCTATAACAATATATTGAACAGGTAACAGCATGATCCTT
CTCTTCTATCCTGTTTCTACATGTCATTTTCACCCAGAAGATGCAGAGAC
GATGCAGCAGTTAGGAGCACTTGCTGCTTTTACAGTGGACTTGGATTCTA
TTCCCAGCACCTACATTTTGTCTCACAACTGTCGGTACCTCCAGTTCCAA
GGCATATATATATAATTCCCTCCTCCAGACTTTGCATGCACCAGGAATGC
ATTTAGTATACACACATATTGCATATAGGCAAATATGCACACAAAGAAAA
ATAAAATTAACAGTTCCTTACAAAAATAAGGATGTCTTG
NNCCCGATGATANNGNGTAGCCTGGCGGCCGCCTGTTTCAATACAGGGAG
GTGACACTATANAATTGACCCGAAGGAATTCAAGTAAATTAATGGTTGGA
CTAGAATTCATAAAACATGAAATAACAACATAAACCACTATTATAAAAAG
TTTAAGCAACAGCTCTCTTTAATAGGGCAAATAAGAGNGGGGGGGGATTA
GGGGCNTTGATGCTANNNNNNTACTTTTAAGAGGANNNANAAGGNGNNNA
AGGNGGCGTTTGGAAGGGGGTAGAGGAGAAAAAGGGGTTCCACTTCCCCC
GGAGGCGAGGGGGGGGGCGAGTGGCGGGGAGGGGGTGTGNNNNTGTGGTG
CAAGGGAGGGGTGTTTTTCCTCANNNACTTTGGNATAAAAGAAAACAAGG
GGGAAAATTGGCTTTAACCTGCCAAACAAANNNAAAATTAATTTTTGTNC
ACACGGGGGAANTAAAAAAAAACAAACCCCTAAAAAAAAAAAACTTTTTT
TCTTGGGAAAAATTTTGGGAGGGGTTTTTTCTCTATAAAAAAAAGGGGGT
GGGGAACAAACAGAAGAAAGATTTTTCTAAAAAAATTTCTTTTAAAAAAA
AAAAAAGAGTTTCTAAAAAAATCCCTCCCAAAAAAAAAAAATTTCTCTCT
TAAAAAAAAAAAAAAAATAATTCCTTTGGGAGATAAAACCCCCCCCCAAA
ATATTTTTTTTTTTCTCTCTCCAGAAGAGAGAAAAAAAAANANAAATTTT
ATTTTAAAAAAAAAACCCCCCCTCCTTTTTTTTTTTGTTGGGAAAAAAAG
GGGGGGCGGGGCGAGCAGAAAGAAAAATTTTTTGTGGTGGGGGGAGGGGG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n11.b1 MSMg01no490_n11.b1 CHROMAT_FILE:
MSMg01no490_n11.b1 PHD_FILE: MSMg01no490_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:33 2005
         (412 letters)



>mm_chr8_65169314_65170125
          Length = 812

 Score =  708 bits (366), Expect = 0.0
 Identities = 397/408 (97%), Gaps = 2/408 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcctaatcatctacccattcattcttccacccatctaccatatacgaagtcatctat 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tgtgcctaatcatctacccattcattcttccacccatctaccatatactaagtcatctat 260

                                                                       
Query: 61  ccatttccctgcacaattgggcgatctataacaatatattgaacaggtaacagcatgatc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ccatttccctgcacaattgggcgatctataacagtatattgaacaggtaacagcatgatc 320

                                                                       
Query: 121 cttctcttctatcctgtttctacatgtcattttcacccagaagatgcagagacgatgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctcttctatcctgtttctacatgtcattttcacccagaagatgcagagacgatgcag 380

                                                                       
Query: 181 cagttaggagcacttgctgcttttacagtggacttggattctattcccagcacctacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttaggagcacttgctgcttttacagtggacttggattctattcccagcacctacatt 440

                                                                       
Query: 241 ttgtctcacaactgtcggtacctccagttccaaggcatatatatataattccctcctcca 300
           ||| |||||||||||| | ||||||||||||||||||||||| ||  |||||||||||||
Sbjct: 441 ttgcctcacaactgtctgcacctccagttccaaggcatatatgta--attccctcctcca 498

                                                                       
Query: 301 gactttgcatgcaccaggaatgcatttagtatacacacatattgcatataggcaaatatg 360
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 gactttgcatgcaccaggcatgcatttagtatacacacatatttcatataggcaaatatg 558

                                                           
Query: 361 cacacaaagaaaaataaaattaacagttccttacaaaaataaggatgt 408
           ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 559 cacacaaagaaaaataaaattaacagttccttacagaaataaggatgt 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)