Query= MSMg01no491_e12.b1 MSMg01no491_e12.b1 CHROMAT_FILE:
MSMg01no491_e12.b1 PHD_FILE: MSMg01no491_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:09 2005
(705 letters)
>mm_chr8_99447614_99448720
Length = 1107
Score = 1180 bits (610), Expect = 0.0
Identities = 683/714 (95%), Gaps = 13/714 (1%)
Strand = Plus / Plus
Query: 4 ggaattccagggtagttgcacctctatattaatctgttgggtccatctctacggacattg 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccagggtaggtg-acctctatattaatctgttgggtccatctctacggacattg 263
Query: 64 gacattccattaccagggtataggtgctagaaacttgctggggagatctggggactgtta 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacattccattaccagggtatgggtgctagaaacttgctggggagatctggggactgtta 323
Query: 124 ctgaggaagtagctgaggacgtctggaaatggctgctgtctctttgtccttgcttcaggc 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 ctgaggaagtagctgaggacgtctggaaatggctgctgtccctttgtccttgcttcaggc 383
Query: 184 caggtggctggggcattccattacctggttctgaaggctgagcctgggcttttttctatt 243
|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 caggtggctgggacattcgattacctgggtctgaaggctgagcctgggcttttttctatt 443
Query: 244 agtaactgatttgcctgggcttgcttggacttgcccaacttttaggtctagtctccttaa 303
||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 444 agtaactgatttgcctgggcttgtttggacttgcccaacttttaggcctaggctccttaa 503
Query: 304 ctgccaatttgaagtctgtcatagaatcagtccagctttctcattgcttatattgtgaga 363
|||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 504 ctgccagtttgaagtctgtcatggaatcagtctagctttctcattgcttatattgtgaga 563
Query: 364 ctacttttagagcctatatctaagcagtagatttgtgtgtaaacattgtgattctatgta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctacttttagagcctatatctaagcagtagatttgtgtgtaaacattgtgattctatgta 623
Query: 424 gtcta--ggaatgagcactttggagtgttcatgtaaacatctgtaaatgcatagatattt 481
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtctataggaatgagcattttggagtgttcatgtaaacatctgtaaatgcatagatattt 683
Query: 482 gtacactggatataacttctcctaaaagccactcggcttttatcttcttccttctttcct 541
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtacactggatgtaacttctcctaaaagccactcggcttttatcttcttccttctttcct 743
Query: 542 tcctctccccatctaagtcactgttctattgctgtta----------tgattaaggcaac 591
| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 744 ttctctccccatctaagtcactgttctattgctgttaagagacactatgattaaggcaac 803
Query: 592 tcatataaaggaaataatttaattgtgggcttgtttacagtctcagagtgctaattcatt 651
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 804 tcatataaaggaaataatttaattgcgggcttgtttacagtctcagagtgctaatttatt 863
Query: 652 atcatcatggcaggagcatggtgggtacatgttggcacatgtgtcactggaaca 705
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 864 atcatcatggcaggagcatggtgggtacatgttggcacgtgtgtcactggaaca 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1107
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1097
Effective search space: 762415
Effective search space used: 762415
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no491_e12.g1 MSMg01no491_e12.g1 CHROMAT_FILE:
MSMg01no491_e12.g1 PHD_FILE: MSMg01no491_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:09 2005
(631 letters)
>mm_chr8_99651414_99652445
Length = 1032
Score = 1013 bits (524), Expect = 0.0
Identities = 564/580 (97%), Gaps = 9/580 (1%)
Strand = Plus / Minus
Query: 1 cagttattagagaacatgagagaaattgttattctgaattctgtatgaagtatggatgga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cagttattagagaacatgagaaaaattgttattctgaattctgtatgaagtatggatgga 613
Query: 61 ctagttaattttgaaagtggatgcaaaattgtcttgtgtgtgatactcaaggaaaagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 612 ctagttaattttgaaagtggatgcaaaattgtcttgtgtgtgatactcaagcaaaagatg 553
Query: 121 actaaacattcaccatgagagtttctgtatagtgttaatatttccctaccaggtgccata 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 actaaacattcaccatgagagtttctgtatagtgttaatatttccccaccaggtgccata 493
Query: 181 aatttagaggaaatagaccccagcctcttttttctccccagagcatt-aggatcagag-- 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 492 aatttagaggaaatagaccccagcctcttttttctccccagagcattgaggatcagagtc 433
Query: 238 ctgtattgtattt--attattgaagaagccaaaaatagaaatctagtgagagaacttgga 295
| |||||||||| | | |||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 c--tattgtatttagacca--gaagaagccaaaaatagaaatctagtaagagaacttgga 377
Query: 296 aaaactaaagcattaacacaggtcaagcttatgagaagttgatccaaagagtgtgactct 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaaactaaagcattaacacaggtcaagcttatgagaagttgatccaaagagtgtgactcc 317
Query: 356 ataaagaatcacaaaaatgtcagctttcttttgtttaagtctggttggctgtagctgttt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ataaagaatcacaaaaatgtcagctttcttttgtttaagtctggttggctgtagctgttt 257
Query: 416 gttaatgtctgctctgaaaagaatgcatatatattacatacacacatttatgattatatc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gttaatgtctgctctgaaaagaatgcatatatattacatacacacatttatgattatatc 197
Query: 476 tatcttcatatctgcctatctagctgtctgtctatctatctatctatctatctatctatc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tatcttcatatctgcctatctagctgtctgtctatctatctatctatctatctatctatc 137
Query: 536 tatctatctatctatctatctatctatctatctatctatc 575
||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tatctatctatctatctatctatctatctatctatctatc 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
