BAC Information

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BAC

Clone NameMSMg01-492D21
Chromosome8 (Build37)
Map Location 49,320,447 - 49,453,387
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492D21.T7 (MSMg01no492_d21.b1)MSMg01-492D21.TJ (MSMg01no492_d21.g1)
ACCAG570045AG570046
length714709
length of high quality
(start - end)		617 (76 - 692)568 (78 - 645)
definitionCHROMAT_FILE: MSMg01no492_d21.b1 PHD_FILE: MSMg01no492_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:25 2005CHROMAT_FILE: MSMg01no492_d21.g1 PHD_FILE: MSMg01no492_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,320,447 - 49,321,063)(49,452,820 - 49,453,387)
sequence
NACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGCG
CGGAATTCCATGTCTTTCCAGAAACCATGGCCTTGAGCATAGTCAGGCAG
AGTAGGAGGTAACTGTACTTCATTTTCCCTTTGTGGTTTCTCTATGGATC
CTTAGAGAAATGAATATATCCAAAAGGTCAATTCTACTTACTTTGTGTAT
TAATCTAATGGTAATAGTAATTTAGCACTTGGAAAGAAAGAAAGAAAGGA
TAAAAAAGAAGAGACGCCTTACCCGTGATGTAATCTTTCACATCATGGAT
TTTGCTCGCGGGGTTGTTATTTTTAAACATATACAGGTTAAAAGGAGCAG
GGTCCTTTCCGATCCTTTTCCAGATTTCAATGTCCGGTGTGGTCCATCTT
CCCGCCAAAATGTCATAATCTCTTTCTCCAAAGTGGATTAGTTTGGTGAG
CGGGTCATACAAGCCCCCGTGGAATCCAATTACCAGCTGAAAGTCGACGT
TGGAGTCAAAGTAGATCTCACCATAGGCAGTGTACTGGATCTGTTTCAGC
ATGAGCCCGTTGCTGCTGAAAACAGCCAGCGGTGTCCCCGTGTTGTCCGA
GGCGATGTAGAACTCATCCCCACTGCTGATCTCCATGGCGAAGAGATGTC
CTTGGAGGTCATAGTACAGGGAGGTGATTTCTGAACTGGAATGGTTGTAG
ACGTGAGTAATTCT

NNNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGAGGACTGTGGAGAGAGA
GAGAGACAGACAGAGAGACTGAGACAGACACACAGAGACAGAGAGTGAGG
GAGGGGGAGATTATTGCGTTTTTGTTTTACACATCTAAGTCTACCCTGAT
TATCCCATATGCCCTCCAGTTCCTCTGGAAACCAGTTTTTGCTTTTTAGC
ACAATACAGTGGGGAAAATGATGGTTTTAGAGAACATGGCGCAACTGTAA
CAGTGTGATAAATCTTTGACTAAACTGTCTTCACGAAGAGTTGGTGAATG
CTGCTGCGGATGATTCTACAGCTTTCTTAAAATGTGGACCACAGACAAGC
AGAATAAATAGTGTCTTCTGTTTAATTCCTTCCTGGTACCAATTAACTGT
GTAACGCTCCATCATTATTGAAGTGCTGTCCTGGTGCCGGGCACTGCTGT
GTGGACTGCATGTGTTTGAGGCGCTCTGTTTATAGTTTGTACTGCACAAT
TATTCCTGCTATTTCACAAGATGGAAATGTGAACTTTACATATGAGTCTT
GTTATGAACATGCGAAGCACTTGCCTTTGGAGTTCGGAACAGCAGACCTT
TAAACAATTTGTATGCTTTACCCCCAGCAATGCATCTATTTGGCCTCAAC
TGGCACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_d21.b1 MSMg01no492_d21.b1 CHROMAT_FILE:
MSMg01no492_d21.b1 PHD_FILE: MSMg01no492_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:25 2005
         (617 letters)



>mm_chr8_49320247_49321263
          Length = 1017

 Score = 1162 bits (601), Expect = 0.0
 Identities = 613/617 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggccttgagcatagtcaggcagagtaggaggtaactgtacttcattttccctttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggccttgagcatagtcaggcagagtaggaggtaactgtacttcattttccctttgtg 260

                                                                       
Query: 61  gtttctctatggatccttagagaaatgaatatatccaaaaggtcaattctacttactttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttctctatggatccttagagaaatgaatatatccaaaaggtcaattctacttactttg 320

                                                                       
Query: 121 tgtattaatctaatggtaatagtaatttagcacttggaaagaaagaaagaaaggataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tgtattaatctaatggtaatagtaatttagcacttggaaagaaagaaagaaaggagaaaa 380

                                                                       
Query: 181 aagaagagacgccttacccgtgatgtaatctttcacatcatggattttgctcgcggggtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaagagacgccttacccgtgatgtaatctttcacatcatggattttgctcgcggggtt 440

                                                                       
Query: 241 gttatttttaaacatatacaggttaaaaggagcagggtcctttccgatccttttccagat 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttattccgaaacatatacaggttaaaaggagcagggtcctttccgatccttttccagat 500

                                                                       
Query: 301 ttcaatgtccggtgtggtccatcttcccgccaaaatgtcataatctctttctccaaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaatgtccggtgtggtccatcttcccgccaaaatgtcataatctctttctccaaagtg 560

                                                                       
Query: 361 gattagtttggtgagcgggtcatacaagcccccgtggaatccaattaccagctgaaagtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattagtttggtgagcgggtcatacaagcccccgtggaatccaattaccagctgaaagtc 620

                                                                       
Query: 421 gacgttggagtcaaagtagatctcaccataggcagtgtactggatctgtttcagcatgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacgttggagtcaaagtagatctcaccataggcagtgtactggatctgtttcagcatgag 680

                                                                       
Query: 481 cccgttgctgctgaaaacagccagcggtgtccccgtgttgtccgaggcgatgtagaactc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccgttgctgctgaaaacagccagcggtgtccccgtgttgtccgaggcgatgtagaactc 740

                                                                       
Query: 541 atccccactgctgatctccatggcgaagagatgtccttggaggtcatagtacagggaggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atccccactgctgatctccatggcgaagagatgtccttggaggtcatagtacagggaggt 800

                            
Query: 601 gatttctgaactggaat 617
           |||||||||||||||||
Sbjct: 801 gatttctgaactggaat 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no492_d21.g1 MSMg01no492_d21.g1 CHROMAT_FILE:
MSMg01no492_d21.g1 PHD_FILE: MSMg01no492_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:25 2005
         (568 letters)



>mm_chr8_49452537_49453504
          Length = 968

 Score = 1083 bits (560), Expect = 0.0
 Identities = 566/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagagaggactgtggagagagagagagacagacagagagactgagacagacacacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 caagagaggactgtggagagagagagagacagacagagagactgagacagacacacagag 792

                                                                       
Query: 61  acagagagtgagggagggggagattattgcgtttttgttttacacatctaagtctaccct 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 791 acagagagtgagggagggggagtttattgcgtttttgttttacacatctaagtctaccct 732

                                                                       
Query: 121 gattatcccatatgccctccagttcctctggaaaccagtttttgctttttagcacaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gattatcccatatgccctccagttcctctggaaaccagtttttgctttttagcacaatac 672

                                                                       
Query: 181 agtggggaaaatgatggttttagagaacatggcgcaactgtaacagtgtgataaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 agtggggaaaatgatggttttagagaacatggcgcaactgtaacagtgtgataaatcttt 612

                                                                       
Query: 241 gactaaactgtcttcacgaagagttggtgaatgctgctgcggatgattctacagctttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gactaaactgtcttcacgaagagttggtgaatgctgctgcggatgattctacagctttct 552

                                                                       
Query: 301 taaaatgtggaccacagacaagcagaataaatagtgtcttctgtttaattccttcctggt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 551 taaaatgtggaccacagacaagcagaataaatagtgtcttctgtttaagtccttcctggt 492

                                                                       
Query: 361 accaattaactgtgtaacgctccatcattattgaagtgctgtcctggtgccgggcactgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accaattaactgtgtaacgctccatcattattgaagtgctgtcctggtgccgggcactgc 432

                                                                       
Query: 421 tgtgtggactgcatgtgtttgaggcgctctgtttatagtttgtactgcacaattattcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgtgtggactgcatgtgtttgaggcgctctgtttatagtttgtactgcacaattattcct 372

                                                                       
Query: 481 gctatttcacaagatggaaatgtgaactttacatatgagtcttgttatgaacatgcgaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gctatttcacaagatggaaatgtgaactttacatatgagtcttgttatgaacatgcgaag 312

                                       
Query: 541 cacttgcctttggagttcggaacagcag 568
           ||||||||||||||||||||||||||||
Sbjct: 311 cacttgcctttggagttcggaacagcag 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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