BAC Information

Click to search

BAC

Clone NameMSMg01-492I02
Chromosome8 (Build37)
Map Location 83,336,170 - 83,505,087
singlet/doubletdoublet
Overlap geneGab1, LOC100039496, LOC234501, LOC100039518, Usp38
Upstream geneLOC100039439, Hhip, LOC546075, Gypa, Frem3, Smarca5, LOC666237
Downstream geneEG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492I02.T7 (MSMg01no492_i02.b1)MSMg01-492I02.TJ (MSMg01no492_i02.g1)
ACCAG570245AG570246
length706751
length of high quality
(start - end)
586 (49 - 634)244 (77 - 320)
definitionCHROMAT_FILE: MSMg01no492_i02.b1 PHD_FILE: MSMg01no492_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:45 2005CHROMAT_FILE: MSMg01no492_i02.g1 PHD_FILE: MSMg01no492_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:45 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(83,504,559 - 83,505,087)(83,336,170 - 83,336,413)
sequence
GGGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGC
GGAATTCACACAATTTCCATGACGCCAGAGGGCAGGGGTTTTAACTGAAC
TTTGTAGGATTTCCAGTTGTCCAAGGACTTTAAAATCCTGTTTCAGGGAG
TGTATCTCCTATGTGTTTTAAAGGAGGTGAGTCTCTGAATGTGCCTTGCA
GTACTGTAATTCAAAAATAGGTTCTCTTTGGCTGCGGCGGAAAGTTTTCT
AAAACAAAGCGTTAGGAAGGAATTTTGTGCTAACATTAAAATTATAATTT
TTTAAGGTATTAGATATTTCAGAAGTAAGATCTGGTGGTTCTAAACTAGT
AAGTGTAATGGTAAATTTCTAACTCTTAGAAAAATTCGGAGGAAATGAAG
CTAGTTTAAGTAAAAAATCTTTAATTGATTTGTTACTTAATCTTCACATT
AAACATTGATAACATTTTTAGAGTTGTATATTTGGATTTTTTTCCTTTGA
GACACATGCCTTACACATAAAATATAATCTGCTTCATGAAATATTAAAAT
GCCACACCTCACTTCCCTACTGTCCTGTTTTGGNTTTCCTTTTTGATCCT
GGGGTGTTTGCTATTTAGGTGGGTGTTTAGGTGTTTATGGTGGGTGNTNN
TTTCCNNTNCCTCCCCTTTATCTCCTCTTTTCTNCCCCTTCTCCCTCTTT
TTTCCC
CCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTATGTAGACCAGGCTGGCCTCA
AACTCAGAGATCTGCTTGCCTCTGCCTCCTAAGTGCTGGGATTAAAGGCG
TGCACCACCACATCAAGCTTCTAGCTCTGTTCCTGAGGAGCAGGGTGTTC
TCAGGTGAATCAGGGCAAGTATTCCCAATAAAAGCCCAACACTGTTCTCA
GCGGGATCTCAAAGGGAGCCTGGCTGAGGCAGAGCCAACTCAGCATTTCA
TCAGTGAGTGAGCTACTGCGAGATACGCGCTCAGACACTGGTGACTTATA
TTGTATCCCTCTGTCATTTCAGGAAACCGTAGAATTTTAACGTGTGTGTG
TGTGGGTGTGTGTGGGTGTGTGAGAGAGAGAGAGATAGAGAGAGAGAGAG
AGAGTCATATGGCCTTCTTTCTCTTCGCTTTTGTGTCTATCTCCTTTTGC
TTTATCTGCCTTTCCCTTTTCACTCTCATTCTTTCAATCGATTCATCTCC
TCTTCCCTTTTCTCTTCTCTTTCGCCCTTTTCTGCCCTTTTTCCTTTCCT
TTTCCCTTTCTTCTTTCTGTCATTTTGGCGTTTATCTTTCCGTTTGGGTT
ATAGCCCCCTCTTTTTCTCCTTTTTTTCCGCGTCCTCATTTATCAACGTA
TCATTTTCACCACCTTTCCTCCTCACTCCTTTTACCGCTATCCTATTTCC
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_i02.b1 MSMg01no492_i02.b1 CHROMAT_FILE:
MSMg01no492_i02.b1 PHD_FILE: MSMg01no492_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:45 2005
         (586 letters)



>mm_chr8_83504102_83505087
          Length = 986

 Score = 1017 bits (526), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  aggatttccagttgtccaaggactttaaaatcctgtttcagggagtgtatctcctatgtg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aggatttccagttgtccaaggactttaaaatcctgtttcagggagtgtatctcctatgtg 927

                                                                       
Query: 118 ttttaaaggaggtgagtctctgaatgtgccttgcagtactgtaattcaaaaataggttct 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 ttttaaaggaggtgagtctctgaatgtgccttgcagtactgtaattcaaaaataggttct 867

                                                                       
Query: 178 ctttggctgcggcggaaagttttctaaaacaaagcgttaggaaggaattttgtgctaaca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ctttggctgcggcggaaagttttctaaaacaaagcgttaggaaggaattttgtgctaaca 807

                                                                       
Query: 238 ttaaaattataattttttaaggtattagatatttcagaagtaagatctggtggttctaaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttaaaattataattttttaaggtattagatatttcagaagtaagatctggtggttctaaa 747

                                                                       
Query: 298 ctagtaagtgtaatggtaaatttctaactcttagaaaaattcggaggaaatgaagctagt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctagtaagtgtaatggtaaatttctaactcttagaaaaattcggaggaaatgaagctagt 687

                                                                       
Query: 358 ttaagtaaaaaatctttaattgatttgttacttaatcttcacattaaacattgataacat 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttaagtaaaaaatctttaattgatttgttacttaatcttcacattaaacattgataacat 627

                                                                       
Query: 418 ttttagagttgtatatttggatttttttcctttgagacacatgccttacacataaaatat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttttagagttgtatatttggatttttttcctttgagacacatgccttacacataaaatat 567

                                                                       
Query: 478 aatctgcttcatgaaatattaaaatgccacacctcacttccctactgtcctgttttggnt 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 566 aatctgcttcatgaaatattaaaatgccacacctcacttccctactgtcctgttttggtt 507

                                                            
Query: 538 ttcctttttgatcctggggtgtttgctatttaggtgggtgtttaggtgt 586
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcctttttgatcctggggtgtttgctatttaggtgggtgtttaggtgt 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no492_i02.g1 MSMg01no492_i02.g1 CHROMAT_FILE:
MSMg01no492_i02.g1 PHD_FILE: MSMg01no492_i02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:45 2005
         (244 letters)



>mm_chr8_83335970_83336613
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctatgtagaccaggctggcctcaaactcagagatctgcttgcctctgcctcctaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatgtagaccaggctggcctcaaactcagagatctgcttgcctctgcctcctaagtgc 260

                                                                       
Query: 61  tgggattaaaggcgtgcaccaccacatcaagcttctagctctgttcctgaggagcagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcgtgcaccaccacatcaagcttctagctctgttcctgaggagcagggt 320

                                                                       
Query: 121 gttctcaggtgaatcagggcaagtattcccaataaaagcccaacactgttctcagcggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttctcaggtgaatcagggcaagtattcccaataaaagcccaacactgttctcagcggga 380

                                                                       
Query: 181 tctcaaagggagcctggctgaggcagagccaactcagcatttcatcagtgagtgagctac 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcaaagggagcctggctaaggcagagccaactcagcatttcatcagtgagtgagctac 440

               
Query: 241 tgcg 244
           ||||
Sbjct: 441 tgcg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)